RNA id: TU1500252


Basic Information

Item Value
RNA id TU1500252
length 220
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1315025
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61524466 ~ 61524685 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTTTTGGTCtatgagcgccgtactcagattattgcacggtgtgctttttccgtaaagttgttttgaaatctgacacagcggttgcattaaggagaagtggatctaaaatcccatgcataacagttgtatcttttatcaatgtttattatgagtatttctgtaaattgatgtggctctctgcaaaatcaccggatgttttggaactactgaacataac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500251 lncRNA downstream 14 61524204 ~ 61524452 (-) True G1315024
TU1500244 lncRNA downstream 1817 61521754 ~ 61522649 (-) False LOC110490517
TU1500245 lncRNA downstream 1817 61522102 ~ 61522649 (-) True LOC110490517
TU1500218 lncRNA downstream 20816 61503142 ~ 61503650 (-) True G1315000
TU1500211 lncRNA downstream 31310 61492789 ~ 61493156 (-) True G1314993
TU1500259 lncRNA upstream 2485 61527170 ~ 61527699 (-) True G1315032
TU1500263 lncRNA upstream 4949 61529634 ~ 61530472 (-) True G1315036
TU1500270 lncRNA upstream 10551 61535236 ~ 61535517 (-) True G1315043
TU1500272 lncRNA upstream 10871 61535556 ~ 61535820 (-) True G1315045
TU1500275 lncRNA upstream 11609 61536294 ~ 61536503 (-) True G1315048
XR_002468711.2 mRNA downstream 384 61521752 ~ 61524082 (-) False LOC110490517
XM_036944901.1 mRNA downstream 38704 61483101 ~ 61485762 (-) True LOC110490515
XM_036944900.1 mRNA downstream 46520 61475576 ~ 61477946 (-) True LOC110490514
XR_002468710.2 mRNA downstream 58479 61427711 ~ 61465987 (-) False LOC100653449
XM_021563938.2 mRNA downstream 58482 61426711 ~ 61465984 (-) False LOC100653449
XR_005036156.1 mRNA upstream 14708 61539393 ~ 61557927 (-) True LOC110490518
XM_021563966.2 mRNA upstream 89252 61613937 ~ 61633036 (-) False LOC110490529
XM_021563965.2 mRNA upstream 89252 61613937 ~ 61646356 (-) False LOC110490529
XR_002468713.2 mRNA upstream 89252 61613937 ~ 61646356 (-) False LOC110490529
XM_021563964.2 mRNA upstream 146958 61671643 ~ 61676140 (-) True LOC110490528
TU1499377 other downstream 751978 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2100159 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 2833084 58689604 ~ 58691382 (-) False G1312023
TU1496820 other downstream 2833452 58689604 ~ 58691014 (-) True G1312023
TU1496827 other downstream 2834109 58634282 ~ 58690357 (-) False G1312023
TU1500688 other upstream 85735 61610420 ~ 61612116 (-) True G1315398
TU1500823 other upstream 309941 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 310693 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 340345 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 340345 61865030 ~ 61891421 (-) False G1315519

Expression Profile