RNA id: TU1500744


Basic Information

Item Value
RNA id TU1500744
length 532
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1315443
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61740528 ~ 61741059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tTATATCGTCGCCGTTCCTCCATTCTCCTGTATCCCTCCGCGCACTGTTCCATAGAATCCCAAGCGGGCTCTGGTACTCTCCCTGGATAGATCGaccacctctctatctcctcccaggTTGTTACCCACTCATCCTTCTCTCGGGTCCATTCTTCCACAAAGTGCTGTTCCTCCctttcacgctgcttggtccttgtttggtgggttattctgtcacgttcgttgaatggaggagaccaaggcgcagcgtgatgtgaatacattcttCTATTTATTAACGAAGAAACACACTATACAAAAAACAaaaacgaacgtgacgctatatataaacaagtgcagacacaggcaacatacaaaacccatagacaggaacaaaaacacatacatcacccatgtcacaccgtgacctaaccaaaataataaagaaaacaaagaatactaaggtcagggcgtgacactctcaATACATGTTGCTGTATTATATTGTGATTTGTTTTAAACCAAAGGTATATATGAACTAACAATCTGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500762 lncRNA downstream 6775 61733338 ~ 61733753 (-) True G1315461
TU1500760 lncRNA downstream 15975 61724304 ~ 61724553 (-) True G1315459
TU1500692 lncRNA downstream 115469 61624841 ~ 61625059 (-) True G1315402
TU1500691 lncRNA downstream 116565 61623706 ~ 61623963 (-) True G1315401
TU1500690 lncRNA downstream 117944 61622371 ~ 61622584 (-) True G1315400
TU1500765 lncRNA upstream 19016 61760075 ~ 61760276 (-) True G1315464
TU1500786 lncRNA upstream 47296 61788355 ~ 61788557 (-) True G1315485
TU1500806 lncRNA upstream 82083 61823142 ~ 61823364 (-) True G1315499
TU1500820 lncRNA upstream 93567 61834626 ~ 61835158 (-) False G1315509
TU1500829 lncRNA upstream 93634 61834693 ~ 61835158 (-) False G1315509
XM_021563962.2 mRNA downstream 8581 61726204 ~ 61731947 (-) True LOC110490527
XM_021563963.2 mRNA downstream 8588 61726204 ~ 61731940 (-) False LOC110490527
XM_021563970.2 mRNA downstream 17402 61719265 ~ 61723126 (-) True LOC110490534
XM_021563969.2 mRNA downstream 21353 61715542 ~ 61719175 (-) True LOC110490533
XM_036944906.1 mRNA downstream 35777 61692661 ~ 61704751 (-) True LOC110490535
XM_021563943.2 mRNA upstream 3107 61744166 ~ 61759577 (-) True LOC110490519
XM_021563958.2 mRNA upstream 50751 61791810 ~ 61798497 (-) True LOC110490525
XM_036944907.1 mRNA upstream 62994 61804053 ~ 61822033 (-) False LOC110490520
XM_021563944.2 mRNA upstream 62994 61804053 ~ 61822658 (-) True LOC110490520
XM_021563946.2 mRNA upstream 95777 61836836 ~ 61842089 (-) False LOC110490521
TU1500688 other downstream 128412 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 968040 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2316221 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 3049146 58689604 ~ 58691382 (-) False G1312023
TU1500823 other upstream 93567 61834626 ~ 61836206 (-) False G1315509
TU1500832 other upstream 94319 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 123971 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 123971 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 149825 61890884 ~ 61891421 (-) True G1315519

Expression Profile