RNA id: TU1500829


Basic Information

Item Value
RNA id TU1500829
length 466
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G1315509
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61834626 ~ 61836573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAAGTATTCAGATATATTTTATTTCAAAAGACAAGTTGAATATTTTtatgtatttgagtattttcaatgCATTGTATTCTCCCATGCATTTAACCCAGGTGTTTGAAAATAGTATTTAAAATAAGTGTTTGAAAATACACGTACTACTTACTACTATTCTAGAATTTGAACCCAGGTATGATTGTAATAAATAATCACTCAGTAATTGTCTGTGGTGACTCAATCATTTATAAATTAACTAATACTACAGCATGTGTAtgatatatgtatattattatgTACATGATGCTACATTTATTATCTGTCAAACGCTGTTTAAGTGTGGGAAAGGAATTACTCGGATGAGCAACATGAGACTATGTTTGAAAACTTGTAAGAAATAAACTCATTGGCTCTTTGTCAGACTATAGTGATTTTTACATTTGTGTTCGGTGTTTCTCCTTGAGCTCATTGTATTACAGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500806 lncRNA downstream 11329 61823142 ~ 61823364 (-) True G1315499
TU1500786 lncRNA downstream 46136 61788355 ~ 61788557 (-) True G1315485
TU1500765 lncRNA downstream 74417 61760075 ~ 61760276 (-) True G1315464
TU1500744 lncRNA downstream 93634 61740528 ~ 61741059 (-) True G1315443
TU1500762 lncRNA downstream 100940 61733338 ~ 61733753 (-) True G1315461
TU1500822 lncRNA upstream 317 61835475 ~ 61836002 (-) False G1315509
TU1500830 lncRNA upstream 1193 61836351 ~ 61836573 (-) True G1315509
TU1500900 lncRNA upstream 32230 61867388 ~ 61868018 (-) True G1315522
TU1500869 lncRNA upstream 39837 61874995 ~ 61977959 (-) False G1315518
TU1500852 lncRNA upstream 63833 61898991 ~ 61952044 (-) False G1315518
XM_021563944.2 mRNA downstream 12035 61804053 ~ 61822658 (-) True LOC110490520
XM_036944907.1 mRNA downstream 12660 61804053 ~ 61822033 (-) False LOC110490520
XM_021563958.2 mRNA downstream 36196 61791810 ~ 61798497 (-) True LOC110490525
XM_021563943.2 mRNA downstream 75116 61744166 ~ 61759577 (-) True LOC110490519
XM_021563962.2 mRNA downstream 102746 61726204 ~ 61731947 (-) True LOC110490527
XM_021563946.2 mRNA upstream 1678 61836836 ~ 61842089 (-) False LOC110490521
XM_036944908.1 mRNA upstream 1678 61836836 ~ 61842089 (-) False LOC110490521
XM_036944909.1 mRNA upstream 1678 61836836 ~ 61842089 (-) True LOC110490521
XR_002468714.2 mRNA upstream 15209 61850367 ~ 61861260 (-) False LOC110490536
XR_005036157.1 mRNA upstream 15209 61850367 ~ 61861261 (-) True LOC110490536
TU1500688 other downstream 222577 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 1062205 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2410386 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 3143311 58689604 ~ 58691382 (-) False G1312023
TU1500832 other upstream 220 61835378 ~ 61836002 (-) False G1315509
TU1500894 other upstream 29872 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 29872 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 55726 61890884 ~ 61891421 (-) True G1315519
TU1500878 other upstream 57513 61892671 ~ 61973695 (-) False G1315518

Expression Profile