RNA id: TU1500822


Basic Information

Item Value
RNA id TU1500822
length 528
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1315509
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61834626 ~ 61836573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtccaggcccgtctgaagtttgctagagagcatttggatgattcagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaactcgactcgtcgtgtttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacaccatgctttggagctgtttttctggaaagggaccaggatgactgatctgtgtagaggaaagaatgaatggggccatgtatcataaGATTTTGAGttaaaacctccttccatcagcaagggcattgaagatgaaacatagctgggtctttcagcatgacaatgatcccaaatacaccgcctgggcaacgaaggagtggcttcataagaagcatttcaaggtcctggagtggcctaaccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500820 lncRNA downstream 317 61834626 ~ 61835158 (-) False G1315509
TU1500829 lncRNA downstream 317 61834693 ~ 61835158 (-) False G1315509
TU1500825 lncRNA downstream 317 61834762 ~ 61835158 (-) False G1315509
TU1500821 lncRNA downstream 317 61834801 ~ 61835158 (-) False G1315509
TU1500806 lncRNA downstream 12111 61823142 ~ 61823364 (-) True G1315499
TU1500830 lncRNA upstream 349 61836351 ~ 61836573 (-) True G1315509
TU1500900 lncRNA upstream 31386 61867388 ~ 61868018 (-) True G1315522
TU1500869 lncRNA upstream 38993 61874995 ~ 61977959 (-) False G1315518
TU1500852 lncRNA upstream 62989 61898991 ~ 61952044 (-) False G1315518
TU1500915 lncRNA upstream 67449 61903451 ~ 61912714 (-) True G1315537
XM_021563944.2 mRNA downstream 12817 61804053 ~ 61822658 (-) True LOC110490520
XM_036944907.1 mRNA downstream 13442 61804053 ~ 61822033 (-) False LOC110490520
XM_021563958.2 mRNA downstream 36978 61791810 ~ 61798497 (-) True LOC110490525
XM_021563943.2 mRNA downstream 75898 61744166 ~ 61759577 (-) True LOC110490519
XM_021563962.2 mRNA downstream 103528 61726204 ~ 61731947 (-) True LOC110490527
XM_021563946.2 mRNA upstream 834 61836836 ~ 61842089 (-) False LOC110490521
XM_036944908.1 mRNA upstream 834 61836836 ~ 61842089 (-) False LOC110490521
XM_036944909.1 mRNA upstream 834 61836836 ~ 61842089 (-) True LOC110490521
XR_002468714.2 mRNA upstream 14365 61850367 ~ 61861260 (-) False LOC110490536
XR_005036157.1 mRNA upstream 14365 61850367 ~ 61861261 (-) True LOC110490536
TU1500688 other downstream 223359 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 1062987 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2411168 59420247 ~ 59424307 (-) False G1312865
TU1496819 other downstream 3144093 58689604 ~ 58691382 (-) False G1312023
TU1500894 other upstream 29028 61865030 ~ 61865660 (-) False G1315519
TU1500896 other upstream 29028 61865030 ~ 61891421 (-) False G1315519
TU1500893 other upstream 54882 61890884 ~ 61891421 (-) True G1315519
TU1500878 other upstream 56669 61892671 ~ 61973695 (-) False G1315518
TU1500860 other upstream 92166 61928168 ~ 61969268 (-) False G1315518

Expression Profile