RNA id: TU1500894


Basic Information

Item Value
RNA id TU1500894
length 518
RNA type TUCP
GC content 0.46
exon number 2
gene id G1315519
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61865030 ~ 61891421 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAAGACCAGAAGATGATTTGCATAGTGATGATGCTCTGCATCGACAGCACATGCTTCAGTGGTCTGGGAGTGTTTATATCCCTGTGAGTTTAACACTTCATGACTGAGAGCTGTCCTTCATGACAACAGAACCTACAACAACCATGACTTTTATCACCATCTTTATCTGGACACTTGCTTTCTGCTTCAAGGAATCTAGAGGACAGATCACTGTGACTCAGACACCTACAGTGAAAACTGTTCTCCCCGGACAGCCAGTCTCTATGAACTGTAAAGCCAGCAGTGATGTGTATCCTGACTGTTGGAGTTCAGGTAAACCATGTTTAGCCTGGTATCAACAGAAACCTGGAGGCGCTCCTAAACTACTGGTCTACTATGGAAGCACCCTCTTCTCTGGGACTCCATCTAGATTCAGTGGCACTGGATCTGGGagtgacttcactctgaccatcagtggagtccaggctgaagatgcagGATATTACTACTGTCAGAGTTACCACAGTGGTAATGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500830 lncRNA downstream 28457 61836351 ~ 61836573 (-) True G1315509
TU1500822 lncRNA downstream 29028 61835475 ~ 61836002 (-) False G1315509
TU1500820 lncRNA downstream 29872 61834626 ~ 61835158 (-) False G1315509
TU1500829 lncRNA downstream 29872 61834693 ~ 61835158 (-) False G1315509
TU1500825 lncRNA downstream 29872 61834762 ~ 61835158 (-) False G1315509
TU1500900 lncRNA upstream 1728 61867388 ~ 61868018 (-) True G1315522
TU1500869 lncRNA upstream 9335 61874995 ~ 61977959 (-) False G1315518
TU1500852 lncRNA upstream 33331 61898991 ~ 61952044 (-) False G1315518
TU1500915 lncRNA upstream 37791 61903451 ~ 61912714 (-) True G1315537
TU1500916 lncRNA upstream 38489 61904149 ~ 61904533 (-) False G1315538
XR_005036157.1 mRNA downstream 3769 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 3770 61850367 ~ 61861260 (-) False LOC110490536
XM_021563946.2 mRNA downstream 22941 61836836 ~ 61842089 (-) False LOC110490521
XM_036944908.1 mRNA downstream 22941 61836836 ~ 61842089 (-) False LOC110490521
XM_036944909.1 mRNA downstream 22941 61836836 ~ 61842089 (-) True LOC110490521
XR_002468721.2 mRNA upstream 192950 62058610 ~ 62062523 (-) False LOC110490558
XR_002468722.2 mRNA upstream 215311 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 260878 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 260878 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 260878 62126538 ~ 62130465 (-) True LOC118938820
TU1500823 other downstream 28824 61834626 ~ 61836206 (-) False G1315509
TU1500832 other downstream 29028 61835378 ~ 61836002 (-) False G1315509
TU1500688 other downstream 252914 61610420 ~ 61612116 (-) True G1315398
TU1499377 other downstream 1092542 60772145 ~ 60772488 (-) True G1314304
TU1497735 other downstream 2440723 59420247 ~ 59424307 (-) False G1312865
TU1500893 other upstream 25224 61890884 ~ 61891421 (-) True G1315519
TU1500878 other upstream 27011 61892671 ~ 61973695 (-) False G1315518
TU1500860 other upstream 62508 61928168 ~ 61969268 (-) False G1315518
TU1500848 other upstream 107517 61973177 ~ 61973695 (-) False G1315518
TU1501505 other upstream 177110 62042770 ~ 62056023 (-) True G1316051

Expression Profile