RNA id: TU1500878


Basic Information

Item Value
RNA id TU1500878
length 2182
RNA type TUCP
GC content 0.45
exon number 6
gene id G1315518
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61874995 ~ 62006707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTCCTTCATgaacccacaacaaccatgactTTTATCACCATCTTCATCTGGACACTTGTTTTCTGCTTTCAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCTGCAGTGAAAGCTGTTCTCCCAGGACAGACAGTCTCTCTGAACTGTAAAACCAGCAGTAATGTGTATTGAAATGACCGTCTAGCCTGGTACCAACAGAAACCTGGAGGAGGTCCTAAACTCCTTTCCATGCTACAACACTTCAGTCTGGGACTCCATCTAGATTCAGTGgcagtggatctgggagtgacttcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagAGTTTACACAGTGGTAATGTGTTCACACGGTGATACAGAGCCACACAAaaacctccctcagtcagactgcacagtgaCTGTAGTGCTACAGCTGGGACCTACTGCAGGTgctgagggggaagagacagtgacagagagtgaAACAGAAGTCATTGTCAGTCCTTTTGAGTTTTGAGTCTATATTAGTTATCCTTTTGTGCAGAATCCACTGtacatgttgcagcagtgtgtgggagggagattccaagatgtgggaagtgtgcaTGAGGGCATGGGATAGAGGATTGTGCAGTTTCGGGGATAAAGTTGTGTCAACTGTAGGGGTGCTGATGTTGCTAGAGATCGTGTCaggtgcgagagaggcaggttgacgtgaccagagtcagagcagtgCAGAgggtgtcatatgctgaggcaatGAAGTGGAAGAGGATCCCAGTGAGTAGTAGATTTGTGCCAGCATAGAGGGATAGGGCAGCGAGTGAGttatgcttcagtaaggttgtcgtcttagcgttcatagcaatggttatcaactgtaccatAGAAATGGAACATAAATGACAGAGAATGGCTGTAGTGgcggcagctgcagagaagtatttaGGTAAACGAGATTTGACTTCAGACGAGTTGTAGGGTGTGATTAGGGGAGGTGTCCCATCCTCCCAGGTTGTTGGCATGGTGCAGaagcagatagggtcaaagtagtggaatgtggtaGTGGGTTTTCATGTGTAGGTGGTAGCTGAAGAGAAGTACCTGGTGTACAAGGTTTTATTCTAGAAGAGTTAATGGGGAGGTGATTTTATTTTTATGAAGTAGTGGTATGTCGGTGTAGGGTCAGTTGGTGGGGCAAGTTTTTGGAACAGGAATAATAAAGATCATTTAATGTACATAGACCATGACTGGCCTCACAATTTAGTGCAGTGGTTGGCGGTATATTCACCTTTAAATTGAATGTGATCcgccaacccaatcccaaagaagagctcttcaacTTCAGTTTCCCTGGGGGATCATAAAGTCTGTTTGCATAGAGAGAATACTTTGCATAGGGAGCAAATGCTTCAGTGGTCTGGTAGTGTTTATATCCCTGTGAGTTTAACACTACATGACTGAGAGCTGTCCTTCAGGACAacagaacccacaacaaccatgactTGTTTCACCATCTTCATCTGGACACTTGTTTTCTGCTTTCAAGAATCCAGAGGACAGTACGTTGTGACACAGACTCCTGCAGTGAAAGCTGTTCTCCCAGGACAGACAGTCTCTCTGAACTGTAAAACCAGCAGTAATGTGTATTCTAATAATCGCCTAGCCTGGTACCAACAGAAACCTGGAGGAGCTCCTAAACTCCTTATTTACCTTGCTACAACACTTCAGTCTGGGACTCCATCTAGATTCAGTGGTAGTGGATCTGGGagtgacttcactctgaccatcagtggagtccaggctgaagatgcaggagattactactgtcagAGTTACCACAGTGGTAATGTGTTCACACAGTGATACAGAGTTGTACAAaaacctccctcagtcagactgcacagtgaCTGTACTGCTACAGCTGGGACCTACTGCAGGTgctgagggggaagagacagtGACATGGAACACTGAGTGAACTAAAATACACTGAGATAAATACACAGGTGATGCtgacaaaaatgtcaatttaaCCCCTCTCATGTTAAATCATTCTTGAAGTGATAACACCCATATGTCCAGATGACATAAATAGTCCTCCCATTTTGTTATGGCCAACCTGAAACATGTTACATAATATGTTGAAAGGAATCCATCTATGTACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500900 lncRNA downstream 24653 61867388 ~ 61868018 (-) True G1315522
TU1500830 lncRNA downstream 56098 61836351 ~ 61836573 (-) True G1315509
TU1500822 lncRNA downstream 56669 61835475 ~ 61836002 (-) False G1315509
TU1500825 lncRNA downstream 57513 61834762 ~ 61835158 (-) False G1315509
TU1500854 lncRNA upstream 2152 61975847 ~ 62006707 (-) False G1315518
TU1500865 lncRNA upstream 2152 61975847 ~ 62006707 (-) False G1315518
TU1500851 lncRNA upstream 18022 61991717 ~ 62006707 (-) False G1315518
TU1500856 lncRNA upstream 18022 61991717 ~ 62006707 (-) True G1315518
TU1500958 lncRNA upstream 57438 62031133 ~ 62031489 (-) True G1315578
XR_005036157.1 mRNA downstream 31410 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 31411 61850367 ~ 61861260 (-) False LOC110490536
XM_021563946.2 mRNA downstream 50582 61836836 ~ 61842089 (-) False LOC110490521
XR_002468721.2 mRNA upstream 84915 62058610 ~ 62062523 (-) False LOC110490558
XR_002468722.2 mRNA upstream 107276 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 152843 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 152843 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 152843 62126538 ~ 62130465 (-) True LOC118938820
TU1500896 other downstream 1250 61865030 ~ 61891421 (-) False G1315519
TU1500893 other downstream 1250 61890884 ~ 61891421 (-) True G1315519
TU1500894 other downstream 27011 61865030 ~ 61865660 (-) False G1315519
TU1500823 other downstream 56465 61834626 ~ 61836206 (-) False G1315509
TU1500832 other downstream 56669 61835378 ~ 61836002 (-) False G1315509
TU1501505 other upstream 69075 62042770 ~ 62056023 (-) True G1316051
TU1501657 other upstream 283403 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 560593 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 781987 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 929164 62902859 ~ 62904682 (-) True G1316451

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU113220 False 433 lncRNA 0.51 2 CM030131.1 6858011 ~ 6908828 (-)
mexican tetra (Astyanax mexicanus) TU113220 True 2192 lncRNA 0.40 3 NC_035905.1 27856275 ~ 27859160 (-)
mexican tetra (Astyanax mexicanus) LOC111189192 True 587 V_segment 0.48 2 NW_019171872.1 4100 ~ 4815 (+)