RNA id: TU1500852


Basic Information

Item Value
RNA id TU1500852
length 2292
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1315518
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61874995 ~ 62006707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACATGATGCTGGATCTGTGAATGAGACATGATGCTGGGCTCAAACATGAAACATGTTTGAAGAATATATGTTTTATCTGTCATTAATTATATGATGGAATATCTGTTATTGTAACTTCCCTGAATCCACCATAGAGTTTAGAACCAGTCACTCCCTCACATCTGTCCCAGTCCAGGTTATTTCAGGCAGTGAAACTGTTCAACTTCTAGACTGGTAGCTGTGGGAGTGAAACTGAGATTTACATAGACAGGGCTGGGTGGTTCTGCTTGTCCCAGAATAGAGCAGCACTGTCACCAGATGTTTACTCTGTCCCCAGAGGGTTGGAGGAAGAGAAGACTCTATGACTATCATGAAGCTGTGATACTGGTTTTTATTATGTGGATCTTGTAAAACAAATGTAGCTTAATGTAGGTGTGATCACATTGGTGAGAGTCCAAGATATCGATCAAATGTTCAATAACATTAGTTTACTGTCTTTATGAGTCTATAAGTCAAGCAGGTAAAAAACTGTCCAAGAAAGATGAATAAGGAGTACCATCTACTACATGTggctagacctctcctgttaatctgttaacattgtagtatctagacctctcctgttaatctgttaacattgtagtatctagacctctcctgttaatctgttaacattgtagtatctagacctctcctgttaatctgttaacattgtagtatctagacctctcctgttaatctgttaacattgtagtatctagacctctcctgttaatctgttaacattgtagtatctagacctctcctgttaatctgttaacattgtagtatctagacctctcctggtaatctgttaacattgtagcaTCTTGTGTTAATATGAACTATTGGTTGATGACAATGCAATGAGAACATAAATAACTAAGCAATGACATTTAGGTCTGATACAGTCATTTTAAAAGAAACTGTGAATCAGGCTTTATGAATATATGATTACACCATTCAACAACATTgaaagagaaaataaaaatatttgttcCAAAGGGAAATCTTTATTTTCATATATTTATCATCAAAGCAAACATTCCTACAGTATCTAATAGTAATAAAACAGAACACATCACATCTAACAATGATACAACCTCAGTCTACAGAGATGATTGACACATGAACTCAAGCAAAGCCCTATGTTAGTCTACATGTCAGTGATCAATAAGGCAGAGAAAATCTGATCTCAGAACAGAGTCAAAGCAGAGGAACCAGCAGCCTCTCTCCACAGGGGTGTGACTGAGGGGTCCTACCCAGAACAGTCAGCCTTCCTCAGGGtcttggtgactggagtctgggATTTCTGCTGGGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCTGGGCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGACCATCCTTCTCCAGGACCCCGGGACTGGTCTCCTGGTTCTTGTTGGTCCCGTCCACTTTCCAGCTCATGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACATGTCAGTGTGGCTGTTGTTGTACTGGACAGCTCCTCACTAGAGGGGGGCAGGACGGTGAGGGTGGGGGCACTGTTACCTGGAACAAACAGAACACATCAACTAAGTAACTACATCAAGTACAGCTACACTTAAAGATTATCTTCAATCAAGTACACATCCAAATAAAGTGAATTGGAAATGCATTCTAAATACAAATGTAACAGTTATATTGTTTAAAAGCTGTAGAGAAAACACTAAAGTAATTATACAAAGCAGATTTATGAACCAAACCAGCATAAAGTGGTTAAATAACTAGAGTTACTAGTCATACGGTGTCAGTTATACATGTCATACAGATATTGTTAAGGAATGAATCTGATCAGAATAGCCTACTCATATTCATAGTATTTTCAGAATttgaacattatttttttttaattacatatCAAACATGTTAGATCATGAAGTCGGTTACAAACTGAGACCCTTTTGTCTTCACAGTAACAGGGAAGGCTACCATGAACAGAATGCAACAGTGATGTCTACTTTATCCTATACCATTAAATAGTTATCATACCAGAATTAAGAGTTCTAGTCTGCAATCTTACAAATCAGACAGACAAATAAACCTACACTTTAACATATTGATGATATACAATATTATTTGAAAGAAGGCTCAGTCAAAAGAAATTTCAAAAGCATCTAAAAAATCTCAAATGTaaatattttaatagagacagagTTTAGGAAAGTAAATACCAAAGAATGTAGTCTGAAAGGCATATCAAAAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500900 lncRNA downstream 30973 61867388 ~ 61868018 (-) True G1315522
TU1500830 lncRNA downstream 62418 61836351 ~ 61836573 (-) True G1315509
TU1500822 lncRNA downstream 62989 61835475 ~ 61836002 (-) False G1315509
TU1500825 lncRNA downstream 63833 61834762 ~ 61835158 (-) False G1315509
TU1500854 lncRNA upstream 23803 61975847 ~ 62006707 (-) False G1315518
TU1500865 lncRNA upstream 23803 61975847 ~ 62006707 (-) False G1315518
TU1500851 lncRNA upstream 39673 61991717 ~ 62006707 (-) False G1315518
TU1500856 lncRNA upstream 39673 61991717 ~ 62006707 (-) True G1315518
TU1500958 lncRNA upstream 79089 62031133 ~ 62031489 (-) True G1315578
XR_005036157.1 mRNA downstream 37730 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 37731 61850367 ~ 61861260 (-) False LOC110490536
XM_021563946.2 mRNA downstream 56902 61836836 ~ 61842089 (-) False LOC110490521
XR_002468721.2 mRNA upstream 106566 62058610 ~ 62062523 (-) False LOC110490558
XR_002468722.2 mRNA upstream 128927 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 174494 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 174494 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 174494 62126538 ~ 62130465 (-) True LOC118938820
TU1500896 other downstream 7570 61865030 ~ 61891421 (-) False G1315519
TU1500893 other downstream 7570 61890884 ~ 61891421 (-) True G1315519
TU1500894 other downstream 33331 61865030 ~ 61865660 (-) False G1315519
TU1500823 other downstream 62785 61834626 ~ 61836206 (-) False G1315509
TU1500832 other downstream 62989 61835378 ~ 61836002 (-) False G1315509
TU1500848 other upstream 21133 61973177 ~ 61973695 (-) False G1315518
TU1501505 other upstream 90726 62042770 ~ 62056023 (-) True G1316051
TU1501657 other upstream 305054 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 582244 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 803638 62755682 ~ 62767499 (-) True LOC110490571

Expression Profile