RNA id: TU1500865


Basic Information

Item Value
RNA id TU1500865
length 2398
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G1315518
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 61874995 ~ 62006707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCTTTATTTTCATCTATTCATTAAAGCATCAAAGCAAACATTCCTACAGTATCTAGTAGTAATAAAACAGAACACATCAAATCTAACACTGATTCAACCTCAGTCTACAGAGAGGATTGACACATGAACTCAAGCAAAGCCCTATGTTAGTCTACATGTCAGTGATCAATAAGGCAGAGAAAATCTGATCTCAGAACAGAGTCAAAGCAGAGGAACCAGCAGCCTCTCTCCACAGGGGTGTGACTGAGGGGTCCTATCCAGAACAGTCAGCCTTCCTCAGGGTCTTGGTCACTGGATTCTGGGATTTCTGCTGGGCTTCACAGGTCACCTCTCCTGCCTTGGTCCACTCCTGGCCAGTGAGAGTCAGGGTGCTGCTCCAGCTGTACAGACCATCCTTCTCCAGGACCCTAGAACTGGTCTCCTGGTTCTTGTTGGTCCCGTCCACTTTCCAGCTCATGGTCCAGTCTGAGGGGAAGCCCTTGTTGGCCAGACACGTCAGTGTGGCTGTTGTTGTACTGGACAGCTCCTCACTAGAGGGGGGCAGGACGGTGAGGGTGGGGGCACTGTTACCTGGATCAAATAGAACACATCAACTAAGTAACAACATCAAGTACAGCTACAGTAAGAGATTATCTTCAGCAAAGGACACAACAAAATAAAGTGAAATGGAAATGCCCTCTAAATATGAATGTAGGAGTCAGATTGATTAGAAGATGTGGAGAAAACACTAAAGTAACATGATACAAAGCAGATTTATGAACCAAACAAGTATAAATTGATTAACTAGAGTTGCTAATCATACGGTGTCAGATATACATGTCATACAGATATTGTTAAGGAATGAATCTGATCAGAATAGCCTACTCGTATTCATAGTATTTTCATCACATATCATCCATGTTAGATTATGAAGTCAGTTACAACCATAACTGAGACCCTTTGTCTTCACACTAACTGTGAAGTCTAGCAGGAACACAATGCAACAATGATGAAAACTATATACAATACTATTAGTTATTATACCAGAATTAGGAATGATAGTTTTCAATTATAAAATTATACTTTTGCAATTATACGAATCAGACACACAAATAAACCTAAAATTTATCATTTTGATTTAATAAATATTTACTTGAAAGAAGGCTCAGTCAAAAGCTACATTTAACCAAAATATTGAGAtaatgattttttaaaaatcGCACAcaaacagtaatacacaatgcaacAGCTATATTCCATATTATTAAATAGTTATCATACTAGAACTATCCTCTGCAATCCATCAAACCACACATTTAAATAAACACCTACATTTGAACATGTTGGTTGTTAGACAAAAGAAATataaaaagttgtatttttttagaAAGTAAAGTATGTAGAATCACAATAATTTCATGGAGACAGAGTTCCACAGAGtaaaataccccccaaaataaTCAGAAAGAAATATGAAGAGAGCTTGTTACTTACTTCCAACATCTAGTCTGGTGCCGCTACCAAAAGTCAACCACAGTGATACAATCCCTATTACTGCTGGTGCAACAACCTCCTGCATGTTTGGCACTCTTCATTTCTTTAGACTGTGGTTCAAATAATTAACTCTACTATAGTATGAATACATTTCAGAAATGATTTAATCTACTCAATTAGAAATAAAGTGTTTTTGATTTTGATTTCCTTAACATGGAACAAAACTGACTTTTTCTTGTACATTTCCTGCTAGGTGCAGTATGTTTATTCATACAACTAATCTAAAATGTAAGATAATCACTTCATAGTTTAAAGGCAGGTCAGATTTGATTAGACGTAATAACATTCATATTCAAATTGGCCATAGTATGTGTAGGGCTTGTGTATTTTGTTTAAATTATCTAAAAATGTTCATTTGAAAAATCCTCAATATCAAGGCAAAATGTATAGTGAAATTGAAACAGGACATCAAAGGGTGAATAAAACAGTTAATTTAGTTGTTTACTTACTTCCAACATCAAGTCTGGTGCCACTACCAAAAGTCCACCACAGTGATACAATCACTATTACTGCTGGTACAAAAACCTCTCTGTGTTGTGATGCTGCAGCTGTTACAGTGAAGATCACGTATAGAGAATCATAATCAACACTAATACACTTTAACATCTTCCAGGTAGAACAAACACTTCATATTAGCTGTTTCTAGATAATATAAATCTGAATTGTATCTTAAATCCAGATAATAGTATTTTTCCTTCCTCTGTGTATCAGGCGTTCTCCTAGTCTGTAGATACAGTCCAGCATTAGATCAGTGTTGCTAGTATTCCTCCATATTGTCCATATGaaagacaacagcagcagcagtagtgataGTGATCCATGTTGTATAttcctttattaaacatgttgatctCACATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1500852 lncRNA downstream 23803 61898991 ~ 61952044 (-) False G1315518
TU1500918 lncRNA downstream 52206 61904149 ~ 61923641 (-) True G1315538
TU1500915 lncRNA downstream 63133 61903451 ~ 61912714 (-) True G1315537
TU1500916 lncRNA downstream 71314 61904149 ~ 61904533 (-) False G1315538
TU1500917 lncRNA downstream 71314 61904149 ~ 61904533 (-) False G1315538
TU1500958 lncRNA upstream 24426 62031133 ~ 62031489 (-) True G1315578
TU1500959 lncRNA upstream 25238 62031945 ~ 62032157 (-) True G1315579
TU1500962 lncRNA upstream 28354 62035061 ~ 62035477 (-) True G1315582
TU1501506 lncRNA upstream 33933 62040640 ~ 62042550 (-) True G1316052
TU1501518 lncRNA upstream 53604 62060311 ~ 62062518 (-) True LOC110490558
XR_005036157.1 mRNA downstream 114586 61850367 ~ 61861261 (-) True LOC110490536
XR_002468714.2 mRNA downstream 114587 61850367 ~ 61861260 (-) False LOC110490536
XM_021563946.2 mRNA downstream 133758 61836836 ~ 61842089 (-) False LOC110490521
XR_002468721.2 mRNA upstream 51903 62058610 ~ 62062523 (-) False LOC110490558
XR_002468722.2 mRNA upstream 74264 62080971 ~ 62083812 (-) True LOC110490561
XR_005036163.1 mRNA upstream 119831 62126538 ~ 62129743 (-) False LOC118938820
XR_005036162.1 mRNA upstream 119831 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA upstream 119831 62126538 ~ 62130465 (-) True LOC118938820
TU1500878 other downstream 2152 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 2152 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 6579 61928168 ~ 61969268 (-) False G1315518
TU1500896 other downstream 84426 61865030 ~ 61891421 (-) False G1315519
TU1501505 other upstream 36063 62042770 ~ 62056023 (-) True G1316051
TU1501657 other upstream 250391 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 527581 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 748975 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 896152 62902859 ~ 62904682 (-) True G1316451

Expression Profile