RNA id: TU1501613


Basic Information

Item Value
RNA id TU1501613
length 2548
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G1316142
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62221814 ~ 62224615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTTTTCATCAGTAGCTCAGCAGCTTTGACAGACAAATATTACAAATCCTTTTATTTTGTACACAGGTTATCAGGAGCTGAGCAGGTCAAGGGAGGAGCTATTGTAATGAGGGGGCGGGTCAATTCGGACAAGGAAGTGGATGAGAAAGTTAGAAACTCCAGAGAGGGCAGCCTTTACAGTACAATCAAGCATTCAAATCCTAACTGCCATTCAAATCTTGTCAGTGTTGAGCAGGTAAGTGAACCAGCATCGTatcaaggtagagagagaggacagcgcAGCTTGGAAAGACATTCAGCTGGACTGAACTAGGCCTAGGCTGAGCTAGGTCCACAATTTGGATAGTTAAGGACTTTAAAGTAGAAAAATGATGTATTCCCAAACTGCCCTTTTTGAAGGACTAGGATGCGGTCATTCGAGTGAGCCTGCCAGTGAAAACCAAAGGAAGACCAGTTGCCATCGTTGGTGTAAACAGACCTACCTTTTCCTTATTCGGTTTTGTTTTAGGGTAGTTGTGTTTTTACTTGATCTAATTTCCATACGGGAACAGAGAACCTGCAGACTGCACCTTTAAAGAGAGGCAAGCCATTGTAATCCGTCAGCAAATCTCATGCTACTACTGGAAACGTCCCTGTGTAAGACGTGATGCTTCAGACAGAACTGCCTTCTGACTGAATTCTATGTGAGCCAAAAGCGTGCTCCAACGGGGAAATAAAACTCTATTCTACAACACTCCAAGGCTTCCCCAACAGACAAGCATGGAGCAGCAGATATGGGCATGACGTCACGTTGGTGAAAAACTACATGTAGGATTATGCAAATATAGAATGCACGCACAGAAAAGCACATGCCTGTTTCCCCTCCTGCATTTGGAGGAGTTACCTAACGTAGCAGGAGTAAAATAAACACCTGACACTGGATCTTCTACAACAAATCTTGACAAgaagggagaaggggggggggggggtcagggaggttctcttctgcaccattcaaccaatccagtacatgtggaggagaagatggagcgtCACCTTGTTAATGTCCAAAAGTGGAAGTTGCGTCACAggctctttccatttccccttaAAACCGGATCGTCCGGTGTTGGGCTCTGCAGAGGCTAGGCGAGAGCTGTATTCATTAGTCGCAGACCTTTGcaaaaaacgttttgctacggaAACCATTTACTCTAGGAactaaacggaagcaaacaaCGCAAACGGaacctacctgaatttgtccaatcgttgcaaaacgttttctgTTTGGGTAAATGTTTTTAGTTAcaaaacattttgaacagaaaataCATTCTGTAAAGGAATCCaaataatgaatacaccccaggctTTATCCTCATAGGAGAATAGAGATGTTCCATATTAGTGTTCTTTCCACTCATTGGATAATCGAGAGATGACAGGGTAGTGTTCTCAACCGGATTGGACGATGCTTTCGTCCAGGGATCGTATTTACAGTGAATGTAGTTCAAAAGTGCTGGACACACAACTAGCTATTTACATGTAGAAAAATAGTGGGGAATAAACAGTGCAGTGGGACATCATGGGCATTGTAGACATTAACTAGATGGAATGGAAGAAAAGTACATGTGAAAATATATAATTGTATATTTTCCCTTTTCAATTAATTGAAATGCTTGTTTTAGTTACATGACAAATACATGTTAAACACACTGCACAACCATTCAGAATTCTGTAGAAAACATTGTGTACGCTTTGCCCCTCATAAGTACATTACCATACACACACCAAATACAATTGGTTCAGCGCTAGATACATTTTTTTCCATAAGCACCAAATGACATGTTCAGTTTCAGCGCAGTGCAAAATAAGTCTATTTTTAAGACATTCCTCCTGTTTAATTTAGATttgtcccctctccccttcatCCCTCCTTATGCTCCCATATTTAGGAGGCTGCTCTGGCTTGCAGAGTCGGATTACTGGAGAGACTGAACACTAACTTACTGCATAAAGAGAGAAACTCAAAACAAGCACAACAATCATGTAAAACTAGCATGTGTACTGCAGTCCTAGTCCCAGCCCAGGGATGACACGGCAGCACTGTATCGAGGAGGGGATGAAAGTCTAACACTGTCCACTCTCCAGTTCCTGAGATGAGGGTGGTAGTGAAAAAGTAGCCCTACTCTAGTTCtcagggactgtgtgtgtgtgtgtgtgttaaggagtAGACttcatggactgtgtgtgtgtggtctagttCTTAGGCGACCAGCCCTTCATCAGAACAGGCTTGAATGACCTGGCTGATGCTTGAATAATACTTGTGTGATGCTATATCAAGTAGCTGCAGTATCCagcaccccctctctcctctctgcttcccCCCTGTGGTGATATGCAGCACTACAGACTGGTGGTCACTGGGCCTCTGGTGGCCTACCCTAGCTGCTGTTCACTTTGAGAGTCTTCATGCGGTGTAACAGGGAGTCCTTCTCCATTTGGGCCTCAGCTAGAGCCATCTTGGCTTTGGAGAGCTCCAGTTTCAAACACTCGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501617 lncRNA downstream 30227 62191164 ~ 62191587 (-) True G1316145
TU1501592 lncRNA downstream 89470 62130621 ~ 62132344 (-) True G1316122
TU1501518 lncRNA downstream 159296 62060311 ~ 62062518 (-) True LOC110490558
TU1501506 lncRNA downstream 179264 62040640 ~ 62042550 (-) True G1316052
TU1500962 lncRNA downstream 186337 62035061 ~ 62035477 (-) True G1315582
TU1501652 lncRNA upstream 25578 62250193 ~ 62250404 (-) True G1316174
TU1501658 lncRNA upstream 32483 62257098 ~ 62264093 (-) True G1316178
TU1501661 lncRNA upstream 46446 62271061 ~ 62271294 (-) True G1316180
TU1501673 lncRNA upstream 65701 62290316 ~ 62290554 (-) True G1316192
TU1501675 lncRNA upstream 66895 62291510 ~ 62291756 (-) True G1316194
XM_021563988.2 mRNA downstream 52479 62165720 ~ 62169335 (-) True LOC110490564
XR_005036162.1 mRNA downstream 91349 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA downstream 91349 62126538 ~ 62130465 (-) True LOC118938820
XR_005036163.1 mRNA downstream 92071 62126538 ~ 62129743 (-) False LOC118938820
XM_036944935.1 mRNA upstream 411023 62635638 ~ 62712367 (-) False LOC110490568
XM_036944936.1 mRNA upstream 452444 62677059 ~ 62710484 (-) False LOC110490568
XM_021563997.2 mRNA upstream 504609 62729224 ~ 62740135 (-) True LOC110490570
XM_021564001.2 mRNA upstream 530341 62754956 ~ 62766800 (-) False LOC110490571
LOC110490778 mRNA upstream 550081 62774696 ~ 62776771 (-) True LOC110490778
TU1501505 other downstream 165791 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 248119 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 248119 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 252546 61928168 ~ 61969268 (-) False G1315518
TU1500893 other downstream 330393 61890884 ~ 61891421 (-) True G1315519
TU1501657 other upstream 32483 62257098 ~ 62264030 (-) False G1316178
TU1501819 other upstream 309673 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 531067 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 678244 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 1061892 63286507 ~ 63287904 (-) True G1316904

Expression Profile