RNA id: TU1501071


Basic Information

Item Value
RNA id TU1501071
length 207
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1315670
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62240101 ~ 62240307 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtggcctttctcaatagcaaggctatgctcactgagtctgtacatagtcaaagatttccttacgtttgggtcagtcacagtggtcaggtattctgccgctgtgtactctctgtttagggccaaatagcattctagtttgttctgtttttttgtaaattctttccaatgtgtcaagtatttttatttttatttctcatgattttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501070 lncRNA upstream 37 62239851 ~ 62240064 (+) True G1315669
TU1500997 lncRNA upstream 15477 62222567 ~ 62224624 (+) False LOC110490566
TU1500998 lncRNA upstream 15477 62222681 ~ 62224624 (+) True LOC110490566
TU1500995 lncRNA upstream 16457 62222567 ~ 62223644 (+) False LOC110490566
TU1501049 lncRNA upstream 21787 62217329 ~ 62218314 (+) True G1315654
TU1501077 lncRNA downstream 6908 62247215 ~ 62247441 (+) True G1315676
TU1501079 lncRNA downstream 8624 62248931 ~ 62249206 (+) True G1315678
TU1501087 lncRNA downstream 24906 62265213 ~ 62265430 (+) True G1315686
TU1501091 lncRNA downstream 31989 62272296 ~ 62272847 (+) True G1315690
TU1501095 lncRNA downstream 38564 62278871 ~ 62279412 (+) True G1315694
XM_036944927.1 mRNA upstream 17135 62171687 ~ 62222966 (+) False LOC110490566
XM_036944928.1 mRNA upstream 17135 62171688 ~ 62222966 (+) False LOC110490566
XM_036944929.1 mRNA upstream 17135 62171689 ~ 62222966 (+) False LOC110490566
XM_021563989.2 mRNA upstream 75614 62158298 ~ 62164487 (+) True LOC110490565
XR_002468723.2 mRNA upstream 78712 62158298 ~ 62161389 (+) False LOC110490565
XM_036944934.1 mRNA downstream 245137 62485444 ~ 62589732 (+) False LOC110490567
XR_005036168.1 mRNA downstream 315822 62556129 ~ 62557834 (+) False LOC118938822
XR_005036169.1 mRNA downstream 315822 62556129 ~ 62557834 (+) False LOC118938822
XR_005036170.1 mRNA downstream 315822 62556129 ~ 62557834 (+) True LOC118938822
XM_021563995.2 mRNA downstream 546320 62786627 ~ 62792739 (+) False depdc4
TU1501009 other upstream 92941 62100972 ~ 62147160 (+) True G1315616
TU1500975 other upstream 159441 62080069 ~ 62080660 (+) True LOC110490560
TU1500970 other upstream 184785 62053244 ~ 62055316 (+) True LOC110490554
TU1500539 other upstream 233380 62005176 ~ 62006721 (+) True G1315290
TU1500568 other upstream 262204 61975849 ~ 61977897 (+) False G1315290
TU1501080 other downstream 16827 62257134 ~ 62264016 (+) True G1315679
TU1501058 other downstream 174918 62415225 ~ 62475514 (+) True LOC110490567
TU1501289 other downstream 374488 62614795 ~ 62615187 (+) False G1315860
TU1501290 other downstream 374488 62614795 ~ 62615187 (+) True G1315860
TU1501457 other downstream 681397 62921704 ~ 62932522 (+) True G1316007

Expression Profile