RNA id: TU1501657


Basic Information

Item Value
RNA id TU1501657
length 1966
RNA type TUCP
GC content 0.44
exon number 12
gene id G1316178
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62257098 ~ 62264093 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaagagagagacaaagagacagagaaagaaacagagaacgagagaaacagagagacagagaatgagagaaacagacagagaacgagagaaacagagagacagagaacgagagaaacagagagacagaacgagagaaacagagagacagaacgagagaaacagagagacagagagacagaaagaaacagagaacgagagaaacagagaaagagagaaacagagagacagagagaaacagagagacagagaacgagagaaacagagagacagataaagagagaaagagagacagagaaagagagacaaagagacagagaaagaaacagagaacgagagaaacagagacagagagacagaaagagagagacaaagagacagagaaagagagacagagaaagagagagacaaagagacagagagacagagaaagagagagacaaagagacagagacagagaaagaaagagacaaagagacagagagacagagaaagagagacagagaaagaaacagaacgagagaaacagagagacagagaacgagagaaacagagcgaaacagagagacagagagaaacagagaaacagacaaacagacaaacagacagagagacagacaaacagagagacagacaaacagacaaacagagagacagagagacagagagacagagaaaaagggaaacagagagagagaaacagagagaaccagagaaaaagggaaacagagaaacagagagaaacagagaaagaaacagagaacgagagaaacagagagacagagagacagacaaagagagagacaaagagacagagagacagagaaacagagaaacagaaagaaacagagaacgagagagacagacaaacagagaacgagagaaacagagagacagagaatgagagaaacagacagacagagaacgagagaaagagaacgagagaaacagagagacagagaacgagagaaacagagagacagagaatgagagaaacagagagacagagaacgagagaaacagagagacagagaacgagagaaacagagagacagagaacgagagaaacagagagacagagaacgagagaaacagagagacagaacgagagaaacagagagacagagaacaagagaacagagaacgagagaaacagagaacgagagaaacagagagacagagaacgagagaaacagagagacagagaacgagagaaacagagagacagaacgagagaaacagagagacagagaacgagagaaacagagaacgagacaaacagagagacagagaacgagagaaacagagagacagagaacgagagaaacagagcgacagagaacgagagaaacagagaacgagagaaagagagacagacaaacagagagagagacaaacagagagacagacaaacagagagacagacaaacagagacagacaaacagagagacagacaaacagagagacagacaaacagagagagagacaaacagagagacagacaaacagagagacagacaaacagagatacagacaaacagagagacagagagagagacagagagagacagagacagacagagagacagagacagagagacagacaaccagagaaccagagaaccagagaaccagagacagagagaaacagagacagagagaaacagagagacagagagaaacagagagacagagagaaagagacagacacagagagacagagacacagagaaacagagagagagaaacagagagacagagaaagagaaacagagagacagagagagatagaaacagagagacagagagacagagaaacagagagacagagatacagagagagttagaaacagagagacagagagaccgcccatctgacaaccccctcacacccactgaggacaaacacaagacacagattgtactacttatggactcaaatgggaaatatatagaaggaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501652 lncRNA downstream 6694 62250193 ~ 62250404 (-) True G1316174
TU1501613 lncRNA downstream 32483 62221814 ~ 62224615 (-) True G1316142
TU1501617 lncRNA downstream 65511 62191164 ~ 62191587 (-) True G1316145
TU1501592 lncRNA downstream 124754 62130621 ~ 62132344 (-) True G1316122
TU1501518 lncRNA downstream 194580 62060311 ~ 62062518 (-) True LOC110490558
TU1501661 lncRNA upstream 7031 62271061 ~ 62271294 (-) True G1316180
TU1501673 lncRNA upstream 26286 62290316 ~ 62290554 (-) True G1316192
TU1501675 lncRNA upstream 27480 62291510 ~ 62291756 (-) True G1316194
TU1501676 lncRNA upstream 29281 62293311 ~ 62293574 (-) True G1316195
TU1501681 lncRNA upstream 43517 62307547 ~ 62328408 (-) True G1316200
XM_021563988.2 mRNA downstream 87763 62165720 ~ 62169335 (-) True LOC110490564
XR_005036162.1 mRNA downstream 126633 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA downstream 126633 62126538 ~ 62130465 (-) True LOC118938820
XR_005036163.1 mRNA downstream 127355 62126538 ~ 62129743 (-) False LOC118938820
XR_005036166.1 mRNA downstream 127433 62129476 ~ 62129665 (-) True LOC118938821
XM_036944935.1 mRNA upstream 371608 62635638 ~ 62712367 (-) False LOC110490568
XM_036944936.1 mRNA upstream 413029 62677059 ~ 62710484 (-) False LOC110490568
XM_021563997.2 mRNA upstream 465194 62729224 ~ 62740135 (-) True LOC110490570
XM_021564001.2 mRNA upstream 490926 62754956 ~ 62766800 (-) False LOC110490571
LOC110490778 mRNA upstream 510666 62774696 ~ 62776771 (-) True LOC110490778
TU1501505 other downstream 201075 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 283403 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 283403 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 287830 61928168 ~ 61969268 (-) False G1315518
TU1500896 other downstream 365677 61865030 ~ 61891421 (-) False G1315519
TU1501819 other upstream 270258 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 491652 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 638829 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 1022477 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1819007 64083037 ~ 64083888 (-) True G1318092

Expression Profile