RNA id: TU1501719


Basic Information

Item Value
RNA id TU1501719
length 489
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1316236
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62412215 ~ 62412783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTTTGAGATGCACTGAAATCTTCAAGAGATACAGAAAATGAACCAGAGAAAATGTTTACCGCTGATCAATGAGCACATTAGGTTCTAATCACACTGATCTGAAATCTGCTTGTGGATTGATTGACATAGTATACATAAAATCATTGGTTCTCATAACTCTGAACCAGataagacaacacaaacagatctgggaccaggctagtgtcCTTTCTCGCATCTACTAATACTAGGGGAGCGATTATCTCGCATTGATAGATTACTTTATACAGAAAAAAACCTGCCAACTCCCTTGTTTAGCTAGTGTAGGTCTCTGACTTGTCCCTCTGTACTCGTTTAACTAGTGTAGGTCTCTTACTTGATTTTCAGTCCTCGTTTAGCTAGTGTAGGTCTCTAACTTGTTTTTCAGTCCTCGTTTAGCTAGTGTAGGTCTCTAACTTGTTTTTCAGTCCTCGTTTAGCTAGTGTAGGTCTCTAACTTGTCCCTCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501712 lncRNA downstream 9798 62402181 ~ 62402417 (-) True G1316230
TU1501699 lncRNA downstream 50212 62358286 ~ 62362003 (-) False G1316217
TU1501698 lncRNA downstream 50212 62361181 ~ 62362003 (-) True G1316217
TU1501681 lncRNA downstream 83807 62307547 ~ 62328408 (-) True G1316200
TU1501682 lncRNA downstream 103785 62307771 ~ 62308430 (-) True G1316201
TU1501763 lncRNA upstream 57100 62469883 ~ 62485399 (-) True G1316276
TU1501772 lncRNA upstream 64562 62477345 ~ 62478039 (-) True G1316281
TU1501826 lncRNA upstream 134080 62546863 ~ 62551018 (-) True G1316330
TU1501835 lncRNA upstream 144503 62557286 ~ 62562789 (-) True G1316332
TU1501803 lncRNA upstream 174259 62587042 ~ 62605108 (-) False G1316310
XM_021563988.2 mRNA downstream 242880 62165720 ~ 62169335 (-) True LOC110490564
XR_005036162.1 mRNA downstream 281750 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA downstream 281750 62126538 ~ 62130465 (-) True LOC118938820
XR_005036163.1 mRNA downstream 282472 62126538 ~ 62129743 (-) False LOC118938820
XM_036944935.1 mRNA upstream 222855 62635638 ~ 62712367 (-) False LOC110490568
XM_036944936.1 mRNA upstream 264276 62677059 ~ 62710484 (-) False LOC110490568
XM_021563997.2 mRNA upstream 316441 62729224 ~ 62740135 (-) True LOC110490570
XM_021564001.2 mRNA upstream 342173 62754956 ~ 62766800 (-) False LOC110490571
LOC110490778 mRNA upstream 361913 62774696 ~ 62776771 (-) True LOC110490778
TU1501657 other downstream 148185 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 356192 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 438520 61892671 ~ 61973695 (-) False G1315518
TU1501819 other upstream 121505 62534288 ~ 62537470 (-) True G1316323
TU1501875 other upstream 342899 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 490076 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 873724 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1670254 64083037 ~ 64083888 (-) True G1318092

Expression Profile