RNA id: TU1501819


Basic Information

Item Value
RNA id TU1501819
length 1745
RNA type TUCP
GC content 0.44
exon number 5
gene id G1316323
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62534288 ~ 62537470 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGTTCTCTCTCCAGTACGTGTgcattctctctacagtatgtgtgttctcTCCACactatgtgtgtgttctctctccagcacgtgtgtgttctctctccagtACGTGTttgttctctctacagtatgtgtgtgttctctctacactatgtgtgtgttctctctacagtacatATGCGTTCTCTCTAcaatctctctacagtatgtgtgttctctctacagtacgtatgtgttctctctacagtctctctacagtatgtgtgtgttctctctacagtacgtgtgttctctctacagcacgtttgtgTGTTTTCTCactacagtatgtgttctctctacagtatgtacagtatgtgttctctctacagtatacGTTATCTCTACAGTATTacagtgtgtgttctctctacagtacatgtgtgtgttctctctacattacctgtgtgttctctctacattacgtgtgtgttctctctacattatgtgtgtgttctctctacattacacgtgtgttctctctacattacacgtgtgttctctctacattacGCGTGTGTTCTCTCTTCAGTATGTGCGTGTTCTCTCAACAttacgtgtgtgttctctctacattacgtgtgtgttctctctacagtacgtgtgtgtgttctctctacattacctgtgtgttctctctacattacgtgtgtgttctctctacagtacGCGTGTGTTCTCTCCAGTACATGTGTGTTCTCTCCATAgtacgtgtgtgttctctccacattacgtgtgtgttctctccatagtacgtgtgtgttctctccacagtacgtgtgtgttctctctacagtacgtgtgtgttctctctacattacgtgtgtgttctctctacagtacgtgtgtgttctctctccagtacgcgtgtgttctctctacagtacgtgtgtgttctctctccagtacgcgtgtgttctctctacagtatgtgtgtgttctctctccagtacgtgtgtgttctctctacagtccgtatgtgttctctctacagtctctctacagtatgggtgtgttctctctacagtacgtgtgtgttctctctacggtatgtgtgtgttctctctacagtatgtgtgtgttctctctacagtccgtgtgtgttctctctacagtatgtgtgtgttctctctacagtacgtgtgtgttctctctacattacgtgtgtgttctctctacattacgtgtgtgttctctctacagtacgtgtgtgttctctctacattacgtgtgtgttctctctacagtacgtgtgtgttctctctacagtacgtgtgtgttctctctacattacgtgtgtgttctctctacagtacgcatgtgttctctctacattgcgcgtgtgttctctctacagtatgtgtgtgttctctctccagtacgtgtgtgttctctctacagtatgtgtgtgttctctctccagtacgtgtgtgttctctctacagtccgtatgtgttctctctacagtcccTCTACAGTAtgggtgtgttctctctacagtacgtgtgtgttctctctacggtatgtgtgtgttctctctacagtatgtgtgtgttctctctacagtccgtatgtgttctctctacagtctctctacagtatgtgtgtgttctctctacagtatgtgtgttctctctacagtatgtgtgtgttctctctccagtACGTGTTTGTTCTcgctacagtatgtgtgttctctctacctatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1501763 lncRNA downstream 48889 62469883 ~ 62485399 (-) True G1316276
TU1501772 lncRNA downstream 56249 62477345 ~ 62478039 (-) True G1316281
TU1501719 lncRNA downstream 121505 62412215 ~ 62412783 (-) True G1316236
TU1501712 lncRNA downstream 131871 62402181 ~ 62402417 (-) True G1316230
TU1501699 lncRNA downstream 172285 62358286 ~ 62362003 (-) False G1316217
TU1501826 lncRNA upstream 9393 62546863 ~ 62551018 (-) True G1316330
TU1501835 lncRNA upstream 19816 62557286 ~ 62562789 (-) True G1316332
TU1501803 lncRNA upstream 49572 62587042 ~ 62605108 (-) False G1316310
TU1501802 lncRNA upstream 50921 62588391 ~ 62589580 (-) True G1316310
TU1501870 lncRNA upstream 95735 62633205 ~ 62669232 (-) True LOC110490568
XM_021563988.2 mRNA downstream 364953 62165720 ~ 62169335 (-) True LOC110490564
XR_005036162.1 mRNA downstream 403823 62126538 ~ 62130465 (-) False LOC118938820
XR_005036164.1 mRNA downstream 403823 62126538 ~ 62130465 (-) True LOC118938820
XR_005036163.1 mRNA downstream 404545 62126538 ~ 62129743 (-) False LOC118938820
XM_036944935.1 mRNA upstream 98168 62635638 ~ 62712367 (-) False LOC110490568
XM_036944936.1 mRNA upstream 139589 62677059 ~ 62710484 (-) False LOC110490568
XM_021563997.2 mRNA upstream 191754 62729224 ~ 62740135 (-) True LOC110490570
XM_021564001.2 mRNA upstream 217486 62754956 ~ 62766800 (-) False LOC110490571
LOC110490778 mRNA upstream 237226 62774696 ~ 62776771 (-) True LOC110490778
TU1501657 other downstream 270258 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 478265 62042770 ~ 62056023 (-) True G1316051
TU1500878 other downstream 560593 61892671 ~ 61973695 (-) False G1315518
TU1500848 other downstream 560593 61973177 ~ 61973695 (-) False G1315518
TU1500860 other downstream 565020 61928168 ~ 61969268 (-) False G1315518
TU1501875 other upstream 218212 62755682 ~ 62767499 (-) True LOC110490571
TU1501967 other upstream 365389 62902859 ~ 62904682 (-) True G1316451
TU1502495 other upstream 749037 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1545567 64083037 ~ 64083888 (-) True G1318092
TU1504007 other upstream 1679034 64216504 ~ 64227675 (-) True G1318164

Expression Profile