RNA id: TU1501967


Basic Information

Item Value
RNA id TU1501967
length 1824
RNA type TUCP
GC content 0.41
exon number 1
gene id G1316451
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62902859 ~ 62904682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCATGCCCTGGACCTCGCAACAGGCAGCATGCCCTGGACCTTGCAACAGGCAGCATGCCCTGGACCTCGCAACATGCAGCATGCCCTGGACCTCGCAACAGGCAGCATGCCCTGGACCTCGCAACAGGCAGCATGCCCTGGACCTCGCAACAGGCAGCATGCCCTGGACCTCGCAACAGGCAGCATGCCCTGGACCTCGCAACAGGCAGCATGCCCTGGACCTCGCAACATGCAGCATGCCCTGGACCTATGAACTATTGGAAGGTTGTGTTAACAACAAAGATAGACACTTTAAAACAAGTTTGCTCCCttgactctttaaaaaaaaacataggaAACCCGATATAGTATATTTACTGTGATAGTATTGATATCATTCATGGTGTAAGATATGTCTGTAAAGCCTCCATGATTCCTTGCAGATTTGGGTCACTTACACACACTGAGATACCAGACAATACACATATTGCATATTGACAGGGAGATATTTAtacagcagggtttcccaaacctcTCTGTGAGTTCTCCCAACTGGTCAACGTATTTTCAAACCTAGATTAAAAGCAGGTGCGCTCAGCCTGGCCTCAGAGCCATAGGAAACATACTATACATATAGGCgagttggttgtttagcaacaaaaccaacgcatgcgcaactatggggcaaaattagattgttgacaacatgtcaactatatttagtctccaaatgtttattgaaaacaagtACATTTGCACAATGTGCCCTTGTGGTCTCTTAAATAcgttgttacagttgttggttagctagctagtgagttGTAGCCTTATTAGCATTGACAtaaaatcagtcaaaacacctcaaaacaagacgtAGTATCAAGAACAAGATTAAACTAGGTGAAACGAGCCACCtatgattccccacatggcagcttgCTAGCTTTCTGATCATTCGGAATGACTTCCGACCACATCAATGTGCGTGCATCATTTTTGTGACATTGTCAGCCAACACGTCTATTTATGAGCACCTCTAAGACATATTATATATACTAATGGTCTAGTTATTTCAGACAGAAAGTATGGAGGTTGGTCGGGGAGGAAGGGTGGATTTAAACCGCGACTGTCTAGcaaaaggttgcatgttcaagaCACGTCGgggacaactgtagcattttagcAGGATTGGGtatgttactttctaaatgtcatCCGTTAGTTACTAGTTACCAGTCCAAAATTATGAAtagtaatgtaacttttggattacccaaactcagtcaAATAATCTGACTACTTTCCGTTtcttttggattactttccccttaaaaaattagaagaagacaaaaaggatccatcaaatgcatttggtgtgtcatcatagtctCTGACTTTCAAAGTATCTGGAATCCTATTATTGATTAGAATGTTTTTGCTGGAAACGTAACTGATTACAGTTTGTTTGTAATCAAATGGCATGTAACTGACTAAGTAATCAGTTACTCCCAAACGTTGCATTTTAgtttaacccttcccctaacccttattctaaccttAACCGAATTCACCTCACCTGGATAATATCAGATGAGGGAATGGTACAGTATTCTGGTGTTATGTACTTGTCACAATGGGGCCTGTTATTTAGTGTGTAATTTAGTGTGTAATACACAGTAATACTAAATGCTCTACAGAATGCTCTTCTCTAACAGAAGAAAAGATTGGTGCCAAATAAGCCTATTCTACCAGAACACAAATTGCACTGTCCATCATTTCTCGAGAGATTTATGATTTGAATGACTTGCTGTATGATCAAACAAGGTCTTCAATTAAATAACTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1502002 lncRNA downstream 20594 62881842 ~ 62882265 (-) True G1316483
TU1501954 lncRNA downstream 111136 62791606 ~ 62791723 (-) True G1316442
TU1501948 lncRNA downstream 119826 62782751 ~ 62783033 (-) True G1316436
TU1501947 lncRNA downstream 120638 62781727 ~ 62782221 (-) True G1316435
TU1501946 lncRNA downstream 121268 62781144 ~ 62781591 (-) True G1316434
TU1502023 lncRNA upstream 34966 62939648 ~ 62939860 (-) True G1316504
TU1502028 lncRNA upstream 39483 62944165 ~ 62944562 (-) True G1316509
TU1502030 lncRNA upstream 45959 62950641 ~ 62950909 (-) True G1316511
TU1502034 lncRNA upstream 48398 62953080 ~ 62953343 (-) True G1316515
TU1502035 lncRNA upstream 48983 62953665 ~ 62953991 (-) True G1316516
XM_021564008.2 mRNA downstream 11939 62886728 ~ 62890920 (-) True LOC110490577
XM_021564007.2 mRNA downstream 11968 62886728 ~ 62890891 (-) False LOC110490577
XM_036944944.1 mRNA downstream 20256 62875090 ~ 62882603 (-) True LOC110490576
XM_021564006.2 mRNA downstream 23506 62875090 ~ 62879353 (-) False LOC110490576
XM_021564003.2 mRNA downstream 30109 62850140 ~ 62872750 (-) True LOC110490574
XM_021562199.2 mRNA upstream 1282 62905964 ~ 62932582 (-) False LOC118936239
XM_036944945.1 mRNA upstream 1282 62905964 ~ 62932588 (-) True LOC118936239
XM_036944946.1 mRNA upstream 76489 62981171 ~ 62985739 (-) False LOC110490858
XM_021564288.2 mRNA upstream 76489 62981171 ~ 62985780 (-) True LOC110490858
XM_021564010.2 mRNA upstream 226668 63131350 ~ 63136329 (-) True LOC110490579
TU1501875 other downstream 135360 62755682 ~ 62767499 (-) True LOC110490571
TU1501819 other downstream 365389 62534288 ~ 62537470 (-) True G1316323
TU1501657 other downstream 638829 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 846836 62042770 ~ 62056023 (-) True G1316051
TU1500848 other downstream 929164 61973177 ~ 61973695 (-) False G1315518
TU1502495 other upstream 381825 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1178355 64083037 ~ 64083888 (-) True G1318092
TU1504007 other upstream 1311822 64216504 ~ 64227675 (-) True G1318164
TU1504148 other upstream 1578145 64482827 ~ 64485318 (-) False LOC110499867
TU1504423 other upstream 2163595 65068277 ~ 65151400 (-) False G1318477

Expression Profile