RNA id: TU1502034



Basic Information


Item Value
RNA id TU1502034
length 264
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1316515
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62953080 ~ 62953343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCCTAACGGTGCAAGATGTTTGCTGAAGTGCATGATTTTTCTCCAGGGATAGCTGGGATTTCAGACCTAAGAGGCAAGAATCCAGCCAAGTCAGTGATAAAATCGATAGCGTCACAGTGTTCTGGTAGCAATAAGCAGACCGGAATGCAGATACGTGGCACAAACGGAAGACAGCCGAGGCCAAGGACCTCAGTGAACAGGAAACTCTATCGCCATGGAGACAGAGATCGTCTGCGATGGAGCCTGGACAAAAATGTATATAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1502030 lncRNA downstream 2171 62950641 ~ 62950909 (-) True G1316511
TU1502028 lncRNA downstream 8518 62944165 ~ 62944562 (-) True G1316509
TU1502023 lncRNA downstream 13220 62939648 ~ 62939860 (-) True G1316504
TU1502002 lncRNA downstream 70815 62881842 ~ 62882265 (-) True G1316483
TU1501954 lncRNA downstream 161357 62791606 ~ 62791723 (-) True G1316442
TU1502035 lncRNA upstream 322 62953665 ~ 62953991 (-) True G1316516
TU1502386 lncRNA upstream 120460 63073803 ~ 63074108 (-) True G1316815
TU1502387 lncRNA upstream 123210 63076553 ~ 63076799 (-) True G1316816
TU1502394 lncRNA upstream 130715 63084058 ~ 63084291 (-) True G1316823
TU1502400 lncRNA upstream 139253 63092596 ~ 63092920 (-) True G1316829
XM_036944945.1 mRNA downstream 20492 62905964 ~ 62932588 (-) True LOC118936239
XM_021562199.2 mRNA downstream 20498 62905964 ~ 62932582 (-) False LOC118936239
XM_021564008.2 mRNA downstream 62160 62886728 ~ 62890920 (-) True LOC110490577
XM_021564007.2 mRNA downstream 62189 62886728 ~ 62890891 (-) False LOC110490577
XM_036944944.1 mRNA downstream 70477 62875090 ~ 62882603 (-) True LOC110490576
XM_036944946.1 mRNA upstream 27828 62981171 ~ 62985739 (-) False LOC110490858
XM_021564288.2 mRNA upstream 27828 62981171 ~ 62985780 (-) True LOC110490858
XM_021564010.2 mRNA upstream 178007 63131350 ~ 63136329 (-) True LOC110490579
XM_021564011.2 mRNA upstream 280431 63233774 ~ 63252696 (-) False LOC110490580
XM_021564014.2 mRNA upstream 280431 63233774 ~ 63253906 (-) False LOC110490580
TU1501967 other downstream 48398 62902859 ~ 62904682 (-) True G1316451
TU1501875 other downstream 185581 62755682 ~ 62767499 (-) True LOC110490571
TU1501819 other downstream 415610 62534288 ~ 62537470 (-) True G1316323
TU1501657 other downstream 689050 62257098 ~ 62264030 (-) False G1316178
TU1501505 other downstream 897057 62042770 ~ 62056023 (-) True G1316051
TU1502495 other upstream 333164 63286507 ~ 63287904 (-) True G1316904
TU1503924 other upstream 1129694 64083037 ~ 64083888 (-) True G1318092
TU1504007 other upstream 1263161 64216504 ~ 64227675 (-) True G1318164
TU1504148 other upstream 1529484 64482827 ~ 64485318 (-) False LOC110499867
TU1504423 other upstream 2114934 65068277 ~ 65151400 (-) False G1318477

Expression Profile