RNA id: TU1504288


Basic Information

Item Value
RNA id TU1504288
length 1930
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1318403
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64824231 ~ 64826160 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATTATAATCATCACTATTATTGGTTTAATATTGCTGTTttgaagtggggggggggggggggataatacaatatacacatgGAGCATATTAATGGATCACATCAAGACAACAATCTTTCAGAGACAATAATATAGACAAGAACACACTCTGAGAGACCTGGagtctgtatgttgtaaaagtgtcaTTATCTGCATAGAAGGATAAGGTCTGCTGATATTTACATGAGTAGTACTTTGCCACAACACTCATTGGATGACAAAGGAAAGGCTTGTCCGTCATTGGCTGAAGAGTGGGCAGCGTTTGGCAGAGATTGGACAATAGACATTCCAAGCAGGAAGGAACCCCAGGGATAGAGGTTCCGCTGAACAACAATGTCTAAAAGGGTGTGTCCcatataacaccctattccctatttagtgcactacttttgaccggggacCATAGGACTCTggcaaaaagtagtgcactacacagggaataggacGAAACCAAAGCCTCCATGTCAAAAGACAGGATCATCAAAACAATACATATATGAAGTATAAAATGAAAAAGTAATTATtaataaaatataatttttgaTGGACAGCTATTTCTATGTACCTTATCCCCACTATAATAATCTGCAGTCCTCCGATTTCCTCCGTTCCCTTTCTTCTGCTTTATAGAATTCATCCCCAGACACACATTTTAACTCTATAACACATTTGTTTCATCCTCCTAACAAAGCTTGGTATCTGTGTGAATGTCATGACATTGGCTTGGAGACGGCTATTGGTATGGTCACAGTAGCTGTGGCCCACCTGTTGAATAGAGAGATACAGCAGTCTGTTATTGAACAGCCAGGGGCCACGGGGCCACTGATCAGTAATCCAGTCCAGACAATGTAATGATGCTGTTAGATGATAGAACAGCATTCATTTAAAGGTAGAGTGAGAGGTCTATGTATTGTAGAAGGACGCaggtgtttcctctctctctctctctcttctcttattTCAATATGTCCAGCCAAGGTCTCAGAGTCCTCCTCCCTTCAATCAACACAACTCTTGTTCTTCTTGTCCTCTGGGACTCGCATGGTCCCTAGAAGTTACACAGAGCTATGTTTGCTTTCTGTGCCCAAAGTCATGAGCTGTCCTGTCTTCCAGGCTAGAGGTCAACGTGATGTCTAGTGGGTAAGTGATTAGAACACATGCTGTGATTCCATGGTTACAGAGTTCCAAACTCAACAGTTCATGTGTGAGGTGGTGTCCTTTGGCTTGGACTGGTGGTTTCTAAGAGCTCTAACAGGGTGATGGTAAGAGGGTGATGAAATAAGGGTGATGAAAAGAGGGTGAGACATACAACAGAATGCAGAAACAACCTATGGTGGGaagggtggagaagagaggagagagtggaagaggaggTGAAAGGAGCTTTGGCACAGTTCATTGGGATCCATCCCTTTCtagtctttctctccttctctctctctctctctctttccccctctctctctctctctctctccctctctcgctctctgacttCCTCACTCTCGTTTTGAAGAGTCTTTAAAGTAAGAGGAGTCTATCCAGCCTCCCCTTCCCATTCTACCAACCAGGGAACAAGGATActggtgacatcacttcctggtcGTCACTGCACAAGCCACCAATCAGGGGACAGTTGCGAAGGGGAGAGGAAGCAAATGGCCGACCAATAGACAACAAACAAAACGAACAGCCTTTCTGTTCTGCATTCGCCTGCTTGTCGGTCAAGTCCTCCCTCAGGCAGCTTGAGTCATATAAAAGTCTCATTCAATTACTAGCAATGCATTtgtttactttatttatttatatatttcatgatttatttttatttatttattattgttatATAATCTTACACCCTTCATAGGCTACATGTCCTTCCATTCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504249 lncRNA downstream 91960 64731298 ~ 64732271 (-) True G1318370
TU1504246 lncRNA downstream 95362 64728347 ~ 64728869 (-) True G1318368
TU1504235 lncRNA downstream 110526 64710319 ~ 64713705 (-) True G1318360
TU1504223 lncRNA downstream 170565 64652923 ~ 64653666 (-) True G1318351
TU1504208 lncRNA downstream 211180 64612230 ~ 64613051 (-) True G1318343
TU1504290 lncRNA upstream 1198 64827358 ~ 64827659 (-) True G1318404
TU1504299 lncRNA upstream 23439 64849599 ~ 64850485 (-) True G1318413
TU1504313 lncRNA upstream 44318 64870478 ~ 64870774 (-) True G1318427
TU1504327 lncRNA upstream 78396 64904556 ~ 64907022 (-) False G1318438
TU1504328 lncRNA upstream 80414 64906574 ~ 64907022 (-) True G1318438
XM_021595640.2 mRNA downstream 115147 64706097 ~ 64709084 (-) True LOC110517721
XM_036944952.1 mRNA downstream 187729 64481916 ~ 64636502 (-) False LOC110499867
XM_036944953.1 mRNA downstream 187729 64481916 ~ 64636502 (-) False LOC110499867
XM_036944954.1 mRNA downstream 187729 64481916 ~ 64636502 (-) False LOC110499867
XM_036944951.1 mRNA downstream 367101 64412045 ~ 64457130 (-) False hgfa
XR_005036190.1 mRNA upstream 116258 64942418 ~ 64944906 (-) False LOC110513474
XR_005036189.1 mRNA upstream 116258 64942418 ~ 64945535 (-) False LOC110513474
XR_005036188.1 mRNA upstream 116258 64942418 ~ 64946166 (-) True LOC110513474
XR_005036177.1 mRNA upstream 134018 64960178 ~ 64980622 (-) False LOC110511498
XR_005036182.1 mRNA upstream 134018 64960178 ~ 64980622 (-) False LOC110511498
TU1504148 other downstream 338913 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 596556 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 740343 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1536327 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 1919549 62902859 ~ 62904682 (-) True G1316451
TU1504423 other upstream 242117 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 258599 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 643807 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1452885 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1982287 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile