RNA id: TU1504359


Basic Information

Item Value
RNA id TU1504359
length 2364
lncRNA type read_through
GC content 0.41
exon number 5
gene id G1318458
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64939624 ~ 65013985 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGGATTCATGCATGTGTTGTCTGTTTACCTTAAGCCATGAAATGGAGGAAGAACCTTGGATAAGGCAGAGGCATCTTTGAACAGTGATACAATTCAGATAGTAGAATCAGTGACCCCTGCTGGTTGAAATATGACATTGCAGGATGGTGATGAATCAACtggaggctggctggctgctgaaGGATGGATGAACACAATGGACTCAACTTCCACATTGTTCTGTTCATAACTCATCAGTCTTTGGTCTACGCACCACAAACACATCAAGTATCTACTATTAAATGTGGGCTGGGTTTTCACTGTTGGAAACGGATGGACTGCTTCAGGAAAAACCTTCAAGTCACATCATATATGCAATCTAAGACTTACTAAACCAGTTGACTTAGTTGGCTTACTGCAAAACAAGAACCATTACTGACCACCTACTTCTGTGTTGGACTACTAGGTGGAACAGGCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGGAACAGTCATTCTGTTAGAAGGAACAACGTTACAATGTGTTGATATCAGGATCTCCAAGGTGTCTTTCATCTGAGTTTTACTGTTTGACTCCAAAGACTCTTATGATGGTTTATAGCTTTCAGCTAAATTCATGCAttaaattattatatttttcaCGACCATCTCTTCTTTCTAattcaaatgcctttagtgatgaaTGAAATTATTATAAAATGCATCATTGAGAATAACATTAAACACTACTGTCAGATGTTACTGTCTAGTGATTTTCTAAGTGGTGTTTTcgaggatcggttggatggtcagttttacgagggtatgtttggcagcatgagtgaaggatgctttgttgcgaactaggaagccgattctagatttaaattttggattggagatgcttaatgtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttatccacatattctaagtcagagccgtccagagtagtgatgctggaggggtagtttatatactgtattttaaaaTCAACCAAATGGATTGAACACgttattaacccactgttcctgacttgcctagttaaatgaaggataaacaacaaaacaaactattATAGTTTTCACAATTATTTCATGTGATGGGAGGACCAAGAAGAAGAAAGGTTAGCACTTCTCCTTGTGTAATAACACGTTTTCATTATACCACTGGCTGTAACTGTGTTAATGATTGATTTCAGGAAAACGCCAAGGAGTGTGGAGATGCATCGCAGATctacctgtctgtttctctcttcctcacctGTCCCACTGCCTCCTTCACCTGTCTCAAGGCCTCCACGCTGGTCTTccgatgacagacagacagctacctAGCCTAAACCCCGCCCCCTCTGAATCGGAATCTCCCTGGAATGTTCCAGAATGCCTGAACTTAGCATGCCTGCTGCTGTTTGCGTTAACTTAAGTCATATTGATTGATAAATATATGATATTGATCATTTTGGCTGTTGGActgagagaaataagctgttgactgactccatgtttgatgtctttacaatcacagagagatGTTGACTTCAGATGTTTGATGTCTTTCAAACACCAAAGTTGTTCTTCTTTGGACAACCGTTCTAAAACCATGAAAGGGCTTTTtggtttcttcttcttcagtGTCTGATAAGAGAACATTGGTTGAAGGAACAACGTTACAATGTGATGGACTACTAGGTGAAACAGCCATTCTGTTAGAAGGAACAACGTTACAATGTGATGGACATCATAGAGATCTAGTAGTTTATTtagatcagggttggggtcaatttctTTAcatttcaggaagtaaactgaaagtCCAATTCCAATTTTCCTCAATGCCACTATGAGAAAAAgacagtttacttcctgaattgactgtatTGACATTGAACTGACCCCAACACTGATCTAGAGATAAGAGACTGTAGTACTtgagggggagtagtggggaggggaggcagggtgcagggGTCCTCTTGGGTGAGGAGTGGTGagatgaggggagacagaggacagtCCAGTCTGGTGTAGCAGAGATGAGCGGAGACAGAGGACAGTCCAGTCTGATCACTGGAGGTTCTCTTGCTACAGAGATGGTCTATATAAGCCTTTTAGTAGCTGACATTCCTAACCTCAACTGAGAGGGTCTCTGTCCTTCTGATGGCCCTGTTGGtgtccactctgtctctctgtgtgtgtcctgttcTTCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504346 lncRNA downstream 8675 64930543 ~ 64930949 (-) True G1318450
TU1504342 lncRNA downstream 10031 64927343 ~ 64929593 (-) False G1318448
TU1504343 lncRNA downstream 10031 64927633 ~ 64929593 (-) True G1318448
TU1504337 lncRNA downstream 18198 64919470 ~ 64921426 (-) False G1318445
TU1504361 lncRNA upstream 16562 64978451 ~ 65013985 (-) False G1318458
TU1504362 lncRNA upstream 16562 64978451 ~ 65013499 (-) False G1318458
TU1504370 lncRNA upstream 16562 64978451 ~ 65013499 (-) False G1318458
TU1504378 lncRNA upstream 16562 64978451 ~ 65013499 (-) False G1318458
TU1504381 lncRNA upstream 18366 64980255 ~ 64998613 (-) False LOC110511498
XM_021595640.2 mRNA downstream 230540 64706097 ~ 64709084 (-) True LOC110517721
XM_036944952.1 mRNA downstream 303122 64481916 ~ 64636502 (-) False LOC110499867
XM_036944953.1 mRNA downstream 303122 64481916 ~ 64636502 (-) False LOC110499867
XM_036944954.1 mRNA downstream 303122 64481916 ~ 64636502 (-) False LOC110499867
XM_036944951.1 mRNA downstream 482494 64412045 ~ 64457130 (-) False hgfa
XR_005036187.1 mRNA upstream 653 64962542 ~ 64965810 (-) True LOC110517607
XR_005036184.1 mRNA upstream 34083 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA upstream 34083 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA upstream 36068 64997957 ~ 65000979 (-) True LOC110510812
XM_036944969.1 mRNA upstream 59516 65021405 ~ 65058643 (-) True LOC118938827
TU1504148 other downstream 454306 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 711949 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 855736 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1651720 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2034942 62902859 ~ 62904682 (-) True G1316451
TU1504423 other upstream 106388 65068277 ~ 65151400 (-) False G1318477
TU1504422 other upstream 122870 65084759 ~ 65151400 (-) False G1318477
TU1505028 other upstream 508078 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1317156 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1846558 66808447 ~ 66895692 (-) False LOC110490781

Expression Profile