RNA id: TU1504422


Basic Information

Item Value
RNA id TU1504422
length 1280
RNA type TUCP
GC content 0.42
exon number 2
gene id G1318477
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65068277 ~ 65153287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTATTATACTACAGGCTACACTGACAGGAACGCAGCAGGGTCATTTCATCACCCATAATACTTATCTTCGGGTATAGTTAGTTCATATTATAATAGTATTTACCACAATCAACACGACAATAAAGACGATGGGGTTTTATAGCAACTCACCCCTCTTATGCTTTCGGGTTATTTCAATAATACTATTTTCAATGTTATTCTCGGAGACACTGTTCAGAAAATGTCTAGACATTGTATTATATTACTTGATACATATGTACTATTATATAGAACTTCTTCAGGATGTGTAATGAGTTAACGACAAACATATAGGAACTCTGACAGCGCGTTCAGACGTCTTAGAAGAGCCCGTTTGAAGAAAATGAGGTTTTTGAAGCACCCTGATCAAATCTCGTGTTTAATTCAGAATGAAGAAAGGTGAGACGTAAATTACATATAAAATATTGTCACACATGAAATTGCTCTGTTTCTCACGTTATTTCAAGGTATAAGAATGATTTTCAAAATGTCCTCATTCACACACACGGCAGTTCCGCTCGTGCACCGTGCTATGCTCCCTTCTACCTCCGGGTGGCACTGTTGCTACCCAGATCTGCATACATGGACATGTTGGATTCCGCTTTCTGTGGATTTAGTCCTTTGGTAATTATAATGTTGACAGGGAGTATGTAAATATACTGTCCCTATACATTCTTACTAGTATTATATCAACCATGACCCTTCCTAATAATAACACAGAGAGAAAAACGTTGGaaatcagacagagagagagttggttcCTGCAGGATGAGAGATACAGTACGTTAGTGTTGGAGAGGAGCAGCATGATGTACGATGGCTTAACGCACAGCTGTCTCCTTACAGGATTGACTCCTTTGTGTGTGGCACAGGCTTATAGCATCCATTTAAACCATACCACCCATatcagggtctctctctctgtctctctctctctctctctctgtctctctctctctctctctctctctctctgtctctgtctctctgtctctgtctctctcgctgtctctgtctctgtctctctctctgtctctgtctctgtctctctctctgtctctgtctctctgtctctgtctctgtctctgtctctctctgtctctctctctctctctctctctctctctgtctctgtctctctgtctctgtctctgtctctgtctctctctctctgtctctgtctctctgtctctgtctctgtctctgtctctgtctctctctgtctctctctctctctctctctctctctctctctgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504439 lncRNA downstream 420 65084096 ~ 65084339 (-) True G1318488
TU1504357 lncRNA downstream 70774 64996016 ~ 65013985 (-) False G1318458
TU1504365 lncRNA downstream 70774 64996016 ~ 65013985 (-) False G1318458
TU1504358 lncRNA downstream 71260 64996016 ~ 65013499 (-) False G1318458
TU1504376 lncRNA downstream 71260 64996016 ~ 65013499 (-) False G1318458
TU1504509 lncRNA upstream 8611 65160011 ~ 65160642 (-) True G1318529
TU1504531 lncRNA upstream 69041 65220441 ~ 65220863 (-) True G1318548
TU1504538 lncRNA upstream 78589 65229989 ~ 65233914 (-) True G1318555
TU1504544 lncRNA upstream 104087 65255487 ~ 65255864 (-) True G1318561
TU1504956 lncRNA upstream 125956 65277356 ~ 65277930 (-) True G1318867
XM_036944969.1 mRNA downstream 26116 65021405 ~ 65058643 (-) True LOC118938827
XR_005036184.1 mRNA downstream 70348 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA downstream 70348 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA downstream 83780 64997957 ~ 65000979 (-) True LOC110510812
XR_005036187.1 mRNA downstream 118949 64962542 ~ 64965810 (-) True LOC110517607
XM_036945553.1 mRNA upstream 1983 65153383 ~ 65231663 (-) True LOC110513258
XM_036944963.1 mRNA upstream 117590 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA upstream 117590 65268990 ~ 65302828 (-) False LOC110517393
XM_036944967.1 mRNA upstream 117590 65268990 ~ 65303134 (-) False LOC110517393
XM_036944965.1 mRNA upstream 119707 65271107 ~ 65302828 (-) False LOC110517393
TU1504148 other downstream 599441 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 857084 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 1000871 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1796855 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2180077 62902859 ~ 62904682 (-) True G1316451
TU1505028 other upstream 318567 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1127645 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1657047 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1704779 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1712441 66863841 ~ 66867740 (-) True LOC110490781

Expression Profile