RNA id: TU1504452


Basic Information

Item Value
RNA id TU1504452
length 840
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1318491
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65090132 ~ 65091285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgttcctgtgaggCAGAGAACAGGACTGTGTGCTTCTCATCACCAGCTGAACATGGCTGCTACTGACAGGCTGGACACACAGAGAATCCTCTGTTGTTTATTTATATgtggtggagagaggaagagagagagagaatgatatagaatgatatagagaatgatagagagaatGATATAGAATGATAGCGAGAATGATATAGAATGatagagagaatgatagagagaatgatagagagaatgatagagagaatGATATAGAAAATGAAATAGAATGATATAGAGAATGATACAAAGAATGATATAGAATGATAGAGAGAATGATATAGAATGATAGAGAGAATAATAGTTCTGTACATGAGTTCAGTACAGCTCAGAGATGGCTTGATGCAGTATAGTGCAGTTATTTAGTGTACAGCTCAGAGATGGCTTGTTGCAGTATAGTGCAGTTATTTAGTGTACAGCTCAGAGATGGCTTGTTGCAGTGTGTCACATCGAGTGTGTCGTCCTCTAGTCTTTATGGCCCAGCTGGCCGGTTGGGGAGGGTCACAGCACGGGGAAATGGAAGTGTTCCTCTGGCTGGTGGTTTTGGTCGTGATCGACCTGAACCGCCTGCCAGAGGAGAGTTTTAGTAGAGTCCTGATGGTGGAGGGGCTTTTGTGAGTCAATCTGCTGTAGAACTGCTCTAGTTGATTGGGCAGTGGGGGGGGAGAAGTGGAGAAGTGTTGTTCTAGCCTGACTTCAATCTGCTGTTGGGCTGCATTCGTTCCCCAGGAGAAGATTATGCCGTTTCCTGCTATCTCTTTAATAACAGATTAAGATgtgttggagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504439 lncRNA downstream 5793 65084096 ~ 65084339 (-) True G1318488
TU1504357 lncRNA downstream 76147 64996016 ~ 65013985 (-) False G1318458
TU1504365 lncRNA downstream 76147 64996016 ~ 65013985 (-) False G1318458
TU1504358 lncRNA downstream 76633 64996016 ~ 65013499 (-) False G1318458
TU1504376 lncRNA downstream 76633 64996016 ~ 65013499 (-) False G1318458
TU1504466 lncRNA upstream 8246 65099531 ~ 65103149 (-) False G1318498
TU1504467 lncRNA upstream 9415 65100700 ~ 65102103 (-) True G1318499
TU1504465 lncRNA upstream 9603 65100888 ~ 65103149 (-) True G1318498
TU1504490 lncRNA upstream 42367 65133652 ~ 65134102 (-) True G1318515
TU1504499 lncRNA upstream 50148 65141433 ~ 65142731 (-) True G1318523
XM_036944969.1 mRNA downstream 31489 65021405 ~ 65058643 (-) True LOC118938827
XR_005036184.1 mRNA downstream 75721 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA downstream 75721 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA downstream 89153 64997957 ~ 65000979 (-) True LOC110510812
XR_005036187.1 mRNA downstream 124322 64962542 ~ 64965810 (-) True LOC110517607
XM_036945553.1 mRNA upstream 62098 65153383 ~ 65231663 (-) True LOC110513258
XM_036944963.1 mRNA upstream 177705 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA upstream 177705 65268990 ~ 65302828 (-) False LOC110517393
XM_036944967.1 mRNA upstream 177705 65268990 ~ 65303134 (-) False LOC110517393
XM_036944965.1 mRNA upstream 179822 65271107 ~ 65302828 (-) False LOC110517393
TU1504148 other downstream 604814 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 862457 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 1006244 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1802228 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2185450 62902859 ~ 62904682 (-) True G1316451
TU1505028 other upstream 378682 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1187760 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1717162 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1764894 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1772556 66863841 ~ 66867740 (-) True LOC110490781

Expression Profile