RNA id: TU1504499


Basic Information

Item Value
RNA id TU1504499
length 1227
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G1318523
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65141433 ~ 65142731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTGACATTGCCATAGGCCTGTAAAATCTGTGTCTTAATCTACCCCACCAAACCAACTCCCAACTGGGGTAGAGTATACATAAATACACAGGTGGGTTCCCAAAGGACTGCTTAGCAGTCAGTAGTTAGTAGAGTGTAGAAGAGTAGACTTgagtacagtaaagtaaagaCCGTATCATTTACAGGAAGAAATTCTAAACATACAGGAGACCCATCCACCCTCTCACCCTCCGTCCTTCCCAAACCCTGACTCAAAACCAACCCTCCGTCCTTCCCAAACCCTGACCCAAAACCAACCCTCCGTCCTTTCCAAACCCTGACCCAAAACCAACCCTCCGTCCTTCCCAAACCCTGACCCAAAACCAACCCTCCGTCCTTTCCAAACCCTGACCCAAAACCAACCCTCCGTCCTTTCCAAACCCTGACCCAAAACCAACCCTCCGTCCTTCCCAAACCCTGACCCAAAACCAACCCTTCAGCCGCTCACCTCTGTACAGCAGCCACTCCATCCAGTGCTTGAAGTCCCTCAGGTTGCAGTCACACTCCCAGGGGTTAGCCCCTAGCTGAAGAGACTGGAGGTTAGCCAGGGGCTCGAAGGCTGCTCTCTCCAGGGCATGGAGCCTGTTCCCGGCCACGGAGAGCCACGTCAGCCCCTGCAGCTCATCCAGCAGACCCAGGGGGATATCAGACAGCCCGTTGAGGGAGACATCTAGCTTCCTCAGCCCCACCAGCCCCTGGAAGAGATCCCTATCCAAGGCCCTAAGACTGTTGTTGTGGAGGGTCAGATCTGATAGATTCCCCAGGTCCTTGAAGAGCGCTGGGGGAAGATTATCCAGGTAGTTGTTGGAGAGATCCAGTCGCTCCAGGGAGGTGAGGTTAGCGAAGGACCCTGGACCCAGGGAGGAGAGGTGGTTGTTGGGCAGCAGGAGGGTGCGGGCGGAGACGGGGAGATGGGTGAGGGCGGGCATGGAGAGCAGGCCGCGCCCGCTGCAGTCTACGTCGGTGGCGTTGCAGAAGCAGGTCGGAGGACAGGCGGTGGTTAGATCCACCAGGgaagacaggacacacaggagaCACAGCAGAActggagacagacggagagagaaagggtcAGAGGTCAATAAGGCAGAAACCAATCTCCCTGTGAAATCATTGTACATTGCAGAGcgcaactgaagagagagagggacagggacaaagatacagggtcagagagagagaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504490 lncRNA downstream 7331 65133652 ~ 65134102 (-) True G1318515
TU1504466 lncRNA downstream 38284 65099531 ~ 65103149 (-) False G1318498
TU1504465 lncRNA downstream 38284 65100888 ~ 65103149 (-) True G1318498
TU1504467 lncRNA downstream 39330 65100700 ~ 65102103 (-) True G1318499
TU1504452 lncRNA downstream 50148 65090132 ~ 65091285 (-) True G1318491
TU1504429 lncRNA upstream 5690 65148421 ~ 65149694 (-) False G1318479
TU1504427 lncRNA upstream 6558 65149289 ~ 65150086 (-) True G1318479
TU1504424 lncRNA upstream 7787 65150518 ~ 65153287 (-) True G1318477
TU1504509 lncRNA upstream 17280 65160011 ~ 65160642 (-) True G1318529
TU1504531 lncRNA upstream 77710 65220441 ~ 65220863 (-) True G1318548
XM_036944969.1 mRNA downstream 82790 65021405 ~ 65058643 (-) True LOC118938827
XR_005036184.1 mRNA downstream 127022 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA downstream 127022 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA downstream 140454 64997957 ~ 65000979 (-) True LOC110510812
XR_005036187.1 mRNA downstream 175623 64962542 ~ 64965810 (-) True LOC110517607
XM_036945553.1 mRNA upstream 10652 65153383 ~ 65231663 (-) True LOC110513258
XM_036944963.1 mRNA upstream 126259 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA upstream 126259 65268990 ~ 65302828 (-) False LOC110517393
XM_036944967.1 mRNA upstream 126259 65268990 ~ 65303134 (-) False LOC110517393
XM_036944965.1 mRNA upstream 128376 65271107 ~ 65302828 (-) False LOC110517393
TU1504148 other downstream 656115 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 913758 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 1057545 64083037 ~ 64083888 (-) True G1318092
TU1502495 other downstream 1853529 63286507 ~ 63287904 (-) True G1316904
TU1501967 other downstream 2236751 62902859 ~ 62904682 (-) True G1316451
TU1505028 other upstream 327236 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1136314 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1665716 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1713448 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1721110 66863841 ~ 66867740 (-) True LOC110490781

Expression Profile