RNA id: TU1504538


Basic Information

Item Value
RNA id TU1504538
length 2212
lncRNA type sense_over
GC content 0.46
exon number 3
gene id G1318555
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65229989 ~ 65233914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttaacgtcggtagccctgccccctggtaaacagtgtacgATCGCTGAATGAttagttttaagtctaatactgcgggtaaagGAGtggccaatgactagggttttcaatttgtcagagctaatggtgggaagcttcagCGTCTCAGATCCCGTAACGGGAgaagtagagacaagagaaggctcggcctcagactccgactcgctgcttaatggggaaaaccggttgaaagtttctgtcggctgaatgagcgacaccggttgagcattcctacagcatttccctccagaagctatgagaaagttgtccggctgcgggaaCCGTGCGAGGGAAtttactaacgttactatctctACTTACTAGTGGCACAGACGcagtttcatcctttcctacactgaaattacccttgcctaacgattgcgtctgaaactgggcttgcagcacagctagcctcgccgtaaggcgatcgttctcctgtatattatgagtacagcgactgcaattagaaggcatcatgttaatgttactacttagcttcggctgttggaggtcctgacgaaccatgtacagataaagcgtccggagtgaaaaagttgaatgagaaaagttgagtgaggggaaaaacccaaaatataaacggtaattaaaaagtaaaaaacataaagttgtcaggtagtaaggtaaggttggcaacaaaacgcacagcaacacgtaaacaagtctgcaagttgtgaccgactaaacacctccctttgcagctggatcctggacttcctaacgatccgcacccaggtggtgagggtaggcaacaacacatcctccacgctgatcctcaacacgggggcccctcaggggtgcgtgctcagtcccctcctgtactccctgttcactcatgactgcatggtcaggcacgactccaactccatcattcattttgctgatgacacaaccattgtaggcctgatcaccgacaatgatgagacagcctataggcaggaggtcagagacctgaccgtgtgatgcaaggacaacaacctctccctcaatgtgatcaagacaaaggagatgattgtggactacaggaaaagaaagaccgagcacgcccccattctcatcgacggggctgtagtggagcaggttgaatgcttcaagttccttgtcgtccacatcaccaacaaatgaaaatggtccaagcacaccaagacagtcgtgaagagggcacgacaaaacctattccccctcaggagaatgaaaagatttgacatgggtcctcatatcctcaaaatgttttacagctgcaccatcgagagcatcctgaagggttgcatcactgcctggcatggcaactgctcggcctccgcaaggcactacagagggtagtacgacatccaggacttctataccaggcagtgtcagaggaaggccctaaaaattgtcagactccagccaccctagtcatagactgttctctctgctcccgcacggcaagcggtaccggagcgccaagtctaggtccaagaggcttctaaaacagcttctacccccaagccagaagactcctgaacagctaatcaaatggctacccaggcttttgcattgcccctcccccccacgctgctgctactctctgtcgtTATCTATgtatagccactttaataactctacctccatgtacataattaccacaattacctcgacacccgtgaccccgcacattgacacattgactctgtaccggtaccccctgtatatagccccactattgatatttactgctgctctttaattatttgttgttattatctcttactttttttgtatttGaaaagtaactgaatgcctcgatgcctttgatgatcttcatcagatgacactcataggacatcatgttacacaatacatgtatgttttgttcgataatgtacatatttatatccaaaaatctcagtttacattggcgccttacgtgcagtaatgttttgattccaaaacatcgggtgattttgcagaaatactcataataaacattgataaaagatacaagtgttattcacagaattaaagatagacttctccttaatgcaaccgctgtgtcagatattttttttttattaacggaaaaagcataatctgagaacggcgctcagaacccaaaacagccagaggaatatccaccattttggaatcaacaaagttagaaacaacaccataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504531 lncRNA downstream 9126 65220441 ~ 65220863 (-) True G1318548
TU1504509 lncRNA downstream 69347 65160011 ~ 65160642 (-) True G1318529
TU1504424 lncRNA downstream 76702 65150518 ~ 65153287 (-) True G1318477
TU1504427 lncRNA downstream 79903 65149289 ~ 65150086 (-) True G1318479
TU1504429 lncRNA downstream 80295 65148421 ~ 65149694 (-) False G1318479
TU1504544 lncRNA upstream 21573 65255487 ~ 65255864 (-) True G1318561
TU1504956 lncRNA upstream 43442 65277356 ~ 65277930 (-) True G1318867
TU1505018 lncRNA upstream 200024 65433938 ~ 65434153 (-) True G1318925
TU1505019 lncRNA upstream 206174 65440088 ~ 65440350 (-) True G1318926
TU1505027 lncRNA upstream 234470 65468384 ~ 65468714 (-) True G1318934
XM_036944969.1 mRNA downstream 171346 65021405 ~ 65058643 (-) True LOC118938827
XR_005036184.1 mRNA downstream 215578 64995972 ~ 65014411 (-) False LOC118938826
XR_005036185.1 mRNA downstream 215578 64995972 ~ 65014411 (-) True LOC118938826
XR_005036186.1 mRNA downstream 229010 64997957 ~ 65000979 (-) True LOC110510812
XR_005036187.1 mRNA downstream 264179 64962542 ~ 64965810 (-) True LOC110517607
XM_036944963.1 mRNA upstream 35076 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA upstream 35076 65268990 ~ 65302828 (-) False LOC110517393
XM_036944967.1 mRNA upstream 35076 65268990 ~ 65303134 (-) False LOC110517393
XM_036944965.1 mRNA upstream 37193 65271107 ~ 65302828 (-) False LOC110517393
XM_036944966.1 mRNA upstream 38126 65272040 ~ 65302828 (-) True LOC110517393
TU1504423 other downstream 78589 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 78589 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 744671 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1002314 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 1146101 64083037 ~ 64083888 (-) True G1318092
TU1505028 other upstream 236053 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 1045131 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1574533 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1622265 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1629927 66863841 ~ 66867740 (-) True LOC110490781

Expression Profile