RNA id: TU1505018


Basic Information

Item Value
RNA id TU1505018
length 216
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1318925
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65433938 ~ 65434153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCATATGTTAACATGAACACGCTATAATTCACTAATGACAATTGTTTTGATGAGTCTAGAACAGCCATTAGATcttcttagggatagggggcagtattcggaagtttggatgactgacgtacccaaagtaaactacctgttactcaggcccagaagctaggatatgcatataattggtagtattggatagaaaacaatgtgaagtttctaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1504956 lncRNA downstream 156008 65277356 ~ 65277930 (-) True G1318867
TU1504544 lncRNA downstream 178074 65255487 ~ 65255864 (-) True G1318561
TU1504538 lncRNA downstream 200024 65229989 ~ 65233914 (-) True G1318555
TU1504531 lncRNA downstream 213075 65220441 ~ 65220863 (-) True G1318548
TU1504509 lncRNA downstream 273296 65160011 ~ 65160642 (-) True G1318529
TU1505019 lncRNA upstream 5935 65440088 ~ 65440350 (-) True G1318926
TU1505027 lncRNA upstream 34231 65468384 ~ 65468714 (-) True G1318934
TU1505034 lncRNA upstream 55885 65490038 ~ 65491611 (-) True G1318941
TU1505056 lncRNA upstream 81660 65515813 ~ 65517510 (-) True G1318958
TU1505059 lncRNA upstream 90694 65524847 ~ 65525349 (-) True G1318961
XM_036944967.1 mRNA downstream 130804 65268990 ~ 65303134 (-) False LOC110517393
XM_036944963.1 mRNA downstream 131110 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA downstream 131110 65268990 ~ 65302828 (-) False LOC110517393
XM_036944965.1 mRNA downstream 131110 65271107 ~ 65302828 (-) False LOC110517393
XM_036944966.1 mRNA downstream 131110 65272040 ~ 65302828 (-) True LOC110517393
XM_036944971.1 mRNA upstream 443857 65878010 ~ 65891457 (-) False LOC110512490
XM_036944970.1 mRNA upstream 443857 65878010 ~ 65892365 (-) True LOC110512490
XM_036944972.1 mRNA upstream 458295 65892448 ~ 65898816 (-) False LOC110511373
XM_036944973.1 mRNA upstream 458295 65892448 ~ 65898816 (-) False LOC110511373
XM_036944974.1 mRNA upstream 458295 65892448 ~ 65898816 (-) False LOC110511373
TU1504423 other downstream 282538 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 282538 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 948620 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1206263 64216504 ~ 64227675 (-) True G1318164
TU1503924 other downstream 1350050 64083037 ~ 64083888 (-) True G1318092
TU1505028 other upstream 35814 65469967 ~ 65473164 (-) True G1318935
TU1505596 other upstream 844892 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1374294 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1422026 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1429688 66863841 ~ 66867740 (-) True LOC110490781

Expression Profile