RNA id: TU1505034


Basic Information

Item Value
RNA id TU1505034
length 1226
lncRNA type intronic
GC content 0.51
exon number 2
gene id G1318941
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65490038 ~ 65491611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgcgtgcgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgttaccttttgAACTGGGGTTGACTACTGATCTGGAGCCAGACTGGGAGAGGCAGTGGGTGGTAGTCTGGCTAACACCGacttcagacaaacacacacccctTTGTGGCATTGACATCGGCCCACAACTGTTGCCGTTAGTCTTTAGCACCTTCCTTCCTATGCCTCTAGCTGATAATGTCtccttaacctctaggctacagCGCCAGCAGAATATCAGATCATACACTACAGACCTTTATAAAGGCACCCTGTTAGAGGACTCAGGTATGAAGGCACCATGTTAGAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTAGAGGACTCAGGTATGAAGGAACCCTGTTAGAGGACTCAGGTATGAAGGAACCCTGTTTAAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTTGAGGACTCAGGTATGAAGGAACCCTGTTTAAGGACTCGGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTTGAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTTGAGGACTCAGGTATAAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTATGAAGGAACCCTGTTGGAGGACTCAGGTGTGAAGGAACCCTGTTGGAGGACACAGCAACAAATGACTGCCTCATGGTAGCTAAGTGTTTCTTGTTTCAGCAGCGGCCTTAGAACTAGAGCATTCCTACCAACACAGAGCGTACCTACCAACACAGAGCGTACCTACCAACACAGAGCGTTCCTACCAACACAGAGCGTACCTACCAACACAGAGCGTTCCTAACAACACAGAGCGTACCTACCAACACAGAGCGTACCTACCAACACAGAGCGTACCTACCAACACAGAGCGCTCCTAACAACACAGAGCGTACCTACCAACACAGAGCGTTCCTACCAACACAGAGCGTACCTACCAACACAGAGCGCTCCTAACAACACAGAGCGTACCTACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505027 lncRNA downstream 21324 65468384 ~ 65468714 (-) True G1318934
TU1505019 lncRNA downstream 49688 65440088 ~ 65440350 (-) True G1318926
TU1505018 lncRNA downstream 55885 65433938 ~ 65434153 (-) True G1318925
TU1504956 lncRNA downstream 212108 65277356 ~ 65277930 (-) True G1318867
TU1504544 lncRNA downstream 234174 65255487 ~ 65255864 (-) True G1318561
TU1505056 lncRNA upstream 24202 65515813 ~ 65517510 (-) True G1318958
TU1505059 lncRNA upstream 33236 65524847 ~ 65525349 (-) True G1318961
TU1505062 lncRNA upstream 35885 65527496 ~ 65530244 (-) True G1318964
TU1505073 lncRNA upstream 55959 65547570 ~ 65548358 (-) True G1318975
TU1505074 lncRNA upstream 59668 65551279 ~ 65552443 (-) True G1318976
XM_036944967.1 mRNA downstream 186904 65268990 ~ 65303134 (-) False LOC110517393
XM_036944963.1 mRNA downstream 187210 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA downstream 187210 65268990 ~ 65302828 (-) False LOC110517393
XM_036944965.1 mRNA downstream 187210 65271107 ~ 65302828 (-) False LOC110517393
XM_036944966.1 mRNA downstream 187210 65272040 ~ 65302828 (-) True LOC110517393
XM_036944971.1 mRNA upstream 386399 65878010 ~ 65891457 (-) False LOC110512490
XM_036944970.1 mRNA upstream 386399 65878010 ~ 65892365 (-) True LOC110512490
XM_036944972.1 mRNA upstream 400837 65892448 ~ 65898816 (-) False LOC110511373
XM_036944973.1 mRNA upstream 400837 65892448 ~ 65898816 (-) False LOC110511373
XM_036944974.1 mRNA upstream 400837 65892448 ~ 65898816 (-) False LOC110511373
TU1505028 other downstream 16874 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 338638 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 338638 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1004720 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1262363 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 787434 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1316836 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1364568 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1372230 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 1469340 66960951 ~ 66961304 (-) True G1319847

Expression Profile