RNA id: TU1505056


Basic Information

Item Value
RNA id TU1505056
length 1678
lncRNA type intronic
GC content 0.46
exon number 2
gene id G1318958
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65515813 ~ 65517510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtccctctttctcaaATTCTCCCCTATGGGAGACAGCCAGTTAGTGTTTGAGCTCTCGTCCATTTCAGACCAAAACATCAGCCCCAAACACACACCTATTCACACAgacatgaggaggaggaggaggaggagaaaggagcaTTCATAGTTTACACTTCAGAAATACTTGTCATTCTCAGGATGAACATTTTATTTCTAATGCAGCCATGGTTTTCTACCTCCCCCTGCTTTTACATCTCAGGGTCTGGAGCCTGTAAACAGCCTGCATAGACTGAAAGAGATGGTATCTCCTGTACTGTTCCTCTCTTTCACCCcgtcatgtttctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctgtctctctctgtctctctgtctctctctctctctctctctgtctctctctgtctctctctgtctgtctcttgctctctctctctctatctctctctctctctctgtctctctctctctctctcaccccagtcTACAGAGTCAAGAGGGAGCAGTCCAAACATGGTAAACAGAGTGTAAGTGAAGTGACTGTGcctgtgtagtagtgtgtgtgttgtactgttgtctgagtgtgtgtgcctgagtgtatgtgtgtctgagaatgtgtgtctgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagttgttgtgtgtgtgtctgtttatatgtgtgtctgagttgttgtgtgtgtgtctgtttatatgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtgtgagtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgcgtgtgtctgagtgtatgtgtgtctgagtgtgtgtgtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgcgtgtgtctgagtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtgtgtgtgtctgagtgtgcgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtgtgtctgagtgtgtgtccgTCTCTGTGACTCAACTGTAACTGCTTGAATGAACACCTCACACCCACAGTACAGACACAGAGCCACAGAGTCACCAGATATACTGTTACCAttcactatcacctacagtaagaactgagaggagactgttaccattcactatcacctacagtaagaactgagaggagactgttaCCATTCACTATCccctacagtaagaactgagaggagactgttaCCATTCACTATCccctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaatTGAGAGGAGACTGTTaccactatcacctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaactgagaggagactgtaaccactatcacctacagtaagaactgagaggagactgtaaccattcactatcacctacagtaagaactgagaggagactgttaCCATTCACTATCccctacagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505034 lncRNA downstream 24202 65490038 ~ 65491611 (-) True G1318941
TU1505027 lncRNA downstream 47099 65468384 ~ 65468714 (-) True G1318934
TU1505019 lncRNA downstream 75463 65440088 ~ 65440350 (-) True G1318926
TU1505018 lncRNA downstream 81660 65433938 ~ 65434153 (-) True G1318925
TU1504956 lncRNA downstream 237883 65277356 ~ 65277930 (-) True G1318867
TU1505059 lncRNA upstream 7337 65524847 ~ 65525349 (-) True G1318961
TU1505062 lncRNA upstream 9986 65527496 ~ 65530244 (-) True G1318964
TU1505073 lncRNA upstream 30060 65547570 ~ 65548358 (-) True G1318975
TU1505074 lncRNA upstream 33769 65551279 ~ 65552443 (-) True G1318976
TU1505077 lncRNA upstream 34966 65552476 ~ 65577467 (-) True G1318979
XM_036944967.1 mRNA downstream 212679 65268990 ~ 65303134 (-) False LOC110517393
XM_036944963.1 mRNA downstream 212985 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA downstream 212985 65268990 ~ 65302828 (-) False LOC110517393
XM_036944965.1 mRNA downstream 212985 65271107 ~ 65302828 (-) False LOC110517393
XM_036944966.1 mRNA downstream 212985 65272040 ~ 65302828 (-) True LOC110517393
XM_036944971.1 mRNA upstream 360500 65878010 ~ 65891457 (-) False LOC110512490
XM_036944970.1 mRNA upstream 360500 65878010 ~ 65892365 (-) True LOC110512490
XM_036944972.1 mRNA upstream 374938 65892448 ~ 65898816 (-) False LOC110511373
XM_036944973.1 mRNA upstream 374938 65892448 ~ 65898816 (-) False LOC110511373
XM_036944974.1 mRNA upstream 374938 65892448 ~ 65898816 (-) False LOC110511373
TU1505028 other downstream 42649 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 364413 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 364413 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1030495 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1288138 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 761535 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1290937 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1338669 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1346331 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 1443441 66960951 ~ 66961304 (-) True G1319847

Expression Profile