RNA id: TU1505117


Basic Information

Item Value
RNA id TU1505117
length 536
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1319013
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65673203 ~ 65674398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTGCACTTTAATTGggccttgtcagcttggggattcgatccagcaacctttcggttactggcccaacgctctaaccactaggctacctgccgtctagACCTTgtactccaaacacacacacacacacactagtccgcaagcacacacacatgcacacacacatgcacacacacatgcacacacacatgcacacacacatgcacacacactactgctgatTAAGCTTGGCTAATAATACACAAACCAATCTTCTGTAAACCCTCACAAGTAGAAACCTCTTTATAATACAAACCAAAGGCAGAGTGTTCATTCAGACCCCCGTCATGTAAACACTGCCTGTAGTCTCCACAGCATAAAGACAGTCTGGCTCGTTGTCGATAAACACCAcagcttcaagcagaccactttAACACAGGACAGACCACTCTGATACAGGACTGAccactctgatacaggacagaccTCTCTAACACAGGACAGACCACTCTGATACAGGACTGAccactctgatacaggacagaccactctgatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505097 lncRNA downstream 21247 65635192 ~ 65651956 (-) True G1318995
TU1505102 lncRNA downstream 25198 65647272 ~ 65648005 (-) True G1319000
TU1505077 lncRNA downstream 95736 65552476 ~ 65577467 (-) True G1318979
TU1505074 lncRNA downstream 120760 65551279 ~ 65552443 (-) True G1318976
TU1505073 lncRNA downstream 124845 65547570 ~ 65548358 (-) True G1318975
TU1505151 lncRNA upstream 64352 65738750 ~ 65739255 (-) True G1319047
TU1505203 lncRNA upstream 111852 65786250 ~ 65824644 (-) True G1319069
TU1505221 lncRNA upstream 141877 65816275 ~ 65816801 (-) True G1319084
TU1505269 lncRNA upstream 173125 65847523 ~ 65850192 (-) True G1319108
TU1505254 lncRNA upstream 185697 65860095 ~ 65863881 (-) True G1319095
XM_036944967.1 mRNA downstream 370069 65268990 ~ 65303134 (-) False LOC110517393
XM_036944963.1 mRNA downstream 370375 65268990 ~ 65302828 (-) False LOC110517393
XM_036944964.1 mRNA downstream 370375 65268990 ~ 65302828 (-) False LOC110517393
XM_036944965.1 mRNA downstream 370375 65271107 ~ 65302828 (-) False LOC110517393
XM_036944966.1 mRNA downstream 370375 65272040 ~ 65302828 (-) True LOC110517393
XM_036944971.1 mRNA upstream 203612 65878010 ~ 65891457 (-) False LOC110512490
XM_036944970.1 mRNA upstream 203612 65878010 ~ 65892365 (-) True LOC110512490
XM_036944972.1 mRNA upstream 218050 65892448 ~ 65898816 (-) False LOC110511373
XM_036944973.1 mRNA upstream 218050 65892448 ~ 65898816 (-) False LOC110511373
XM_036944974.1 mRNA upstream 218050 65892448 ~ 65898816 (-) False LOC110511373
TU1505028 other downstream 200039 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 521803 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 521803 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1187885 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1445528 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 604647 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 1134049 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 1181781 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 1189443 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 1286553 66960951 ~ 66961304 (-) True G1319847

Expression Profile