RNA id: TU1505293



Basic Information


Item Value
RNA id TU1505293
length 325
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1319126
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65952931 ~ 65953255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagaaacagagtagtatctggaggactgtgagagaaacagagtagtgtctggaggactgagagagaaacagagtagtgtctggaggactgagagagaaacagagtagtatctggaggactgagagagaaacagagtagtatctggaggactgagagagaaacagagtagtatctggaggactgagagagaaacagagtagtatctggaggactgagagagaaacagagtagtgtctggaggactgagagagaaacagagtagtatctggaggactgagagagaaacagagtagtatctggaggactgagagagagactgagaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1505285 lncRNA downstream 20631 65932088 ~ 65932300 (-) True G1319120
TU1505284 lncRNA downstream 22002 65930679 ~ 65930929 (-) True G1319119
TU1505281 lncRNA downstream 28683 65922192 ~ 65924248 (-) True G1319116
TU1505253 lncRNA downstream 85196 65866213 ~ 65867735 (-) True G1319094
TU1505254 lncRNA downstream 89050 65860095 ~ 65863881 (-) True G1319095
TU1505295 lncRNA upstream 6396 65959651 ~ 65960031 (-) True G1319128
TU1505250 lncRNA upstream 33991 65987246 ~ 65988552 (-) False LOC110500955
TU1505252 lncRNA upstream 34057 65987312 ~ 65988552 (-) False LOC110500955
TU1505251 lncRNA upstream 34168 65987423 ~ 65988552 (-) False LOC110500955
TU1505232 lncRNA upstream 37123 65990378 ~ 65993631 (-) True LOC110500955
XM_036944979.1 mRNA downstream 35524 65901742 ~ 65917407 (-) False LOC110511371
XM_036944977.1 mRNA downstream 54112 65892448 ~ 65898819 (-) True LOC110511373
XM_036944975.1 mRNA downstream 54114 65892448 ~ 65898817 (-) False LOC110511373
XM_036944976.1 mRNA downstream 54114 65892448 ~ 65898817 (-) False LOC110511373
XM_036944974.1 mRNA downstream 54115 65892448 ~ 65898816 (-) False LOC110511373
XM_036944980.1 mRNA upstream 28386 65981641 ~ 65986430 (-) False LOC110499707
XM_036944981.1 mRNA upstream 28386 65981641 ~ 65986435 (-) True LOC110499707
XM_036944982.1 mRNA upstream 34677 65987932 ~ 66009466 (-) False LOC110500955
XM_036944984.1 mRNA upstream 34677 65987932 ~ 66009466 (-) False LOC110500955
XM_036944985.1 mRNA upstream 34677 65987932 ~ 66009466 (-) False LOC110500955
TU1505028 other downstream 479767 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 801531 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 801531 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1467613 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1725256 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 325790 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 855192 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 902924 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 910586 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 1007696 66960951 ~ 66961304 (-) True G1319847

Expression Profile