RNA id: TU1505388


Basic Information

Item Value
RNA id TU1505388
length 441
lncRNA type intronic
GC content 0.40
exon number 4
gene id G1319189
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66059290 ~ 66060760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCATCACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTACAGTTATCACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTACAGTTATAACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTACAGTTATCACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTACAGCCATCACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTAGTTATCACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTACACAGTTATCACCCTCATCCTATAGGTCTATTGAGAAGGAAGCTACAGTTATCACCCtcatcatatacagtaccagtcaaaagtttagaaacACCtagtcattcaagggtttttctttctacattgtagaatcatagtgaaaacatcaaaactatgaaataacacatatggaatcatgcagtaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505386 lncRNA downstream 246 66058473 ~ 66059044 (-) True G1319188
TU1505315 lncRNA downstream 39931 66019069 ~ 66019359 (-) True G1319142
TU1505232 lncRNA downstream 65659 65990378 ~ 65993631 (-) True LOC110500955
TU1505250 lncRNA downstream 70738 65987246 ~ 65988552 (-) False LOC110500955
TU1505413 lncRNA upstream 54416 66115176 ~ 66115643 (-) True G1319213
TU1505415 lncRNA upstream 56657 66117417 ~ 66118092 (-) True G1319215
TU1505423 lncRNA upstream 60528 66121288 ~ 66123542 (-) True G1319218
TU1505430 lncRNA upstream 81074 66141834 ~ 66142265 (-) True G1319225
TU1505553 lncRNA upstream 116732 66177492 ~ 66178173 (-) True G1319321
XM_036944994.1 mRNA downstream 11391 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 11392 66033061 ~ 66047898 (-) False LOC110499708
XM_036944990.1 mRNA downstream 49824 65987932 ~ 66009466 (-) False LOC110500955
XR_005036194.1 mRNA upstream 352575 66413335 ~ 66416152 (-) False LOC110519161
XM_036945007.1 mRNA upstream 356694 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 356694 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 458958 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 504158 66564918 ~ 66630601 (-) False LOC110519130
TU1505028 other downstream 586126 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 907890 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 907890 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1573972 64482827 ~ 64485318 (-) False LOC110499867
TU1504007 other downstream 1831615 64216504 ~ 64227675 (-) True G1318164
TU1505596 other upstream 218285 66279045 ~ 66282108 (-) True G1319357
TU1506125 other upstream 747687 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 795419 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 803081 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 900191 66960951 ~ 66961304 (-) True G1319847

Expression Profile