RNA id: TU1505611


Basic Information

Item Value
RNA id TU1505611
length 1326
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G1319366
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66302517 ~ 66304437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTCTCTCTTGTTCTCCTGTTCATCCCTGGAAGGAGGATGAGGCTCAGTGAATACGGACAGCTGGAGGTTGTCTGTCACTGATTGGTGGATAATTCTTGTGGGCAGAAAAGGGGATGAAAGGGAGCGAATGACAGAATAAACAGAAGGAAAATAAATGTTGTGTGTTTGAGAGTTAATGTCCAAACTGAACTATTATGGGTCTTGTCTTCACAATATGAACAAATCCACAAACATCTTTTGTGTTCTTTTATTACGAAATAGAGCTACAATATGAACATTGCATTTTCTCCTGGCCTCTTGTCcgtctgtgggtctgtctgtctgtctgtctgtgggtcttCCACTCTGCTACAGTAACATGGGTTGAGGTATTTTCtgcaggtcactgtgttctttgaACACTTCTGTTGGATAATGACAGATCAACCTTGTTCTGTCACTGTCagagggtctgtgtgtgtgtgtgtgtgtgtgtgtattatgatGTCATGGTGCTTCGTGACCAATGGGGAGGTCTGAAGAATGAGGCGTAAACAAAAAGGTTCTGAATGTTTTCAAAATGACAACCAACCAAAACAAAGGGACAAGGTCAGGGAAAAACAGggaaaagaaaaaaaatatatattttaaaaaagagAAACCAGCGTCTGATTGGGCGGCACATCATTCAGTTCAGGGGAAGAAGGACCTGCCCGGAGCCAAAATGGTCGCCGGATTTCCCTCCATTTGGCCTAAAGTCAATTTGCCAGACGGTGGATGGTCGAGGAATAAAAAGCAGGATGCCTGAGCCAGCCACACCGGCATTcgctgtctgtaggtctgtccgtctgtctgctgTGAGGAACCAGGGCCAGGGACCAGAACTCTAACCAGGTCTAGGATCCCATGGTGGACTGAGAACGAGGGGAAGGAAGTCTCTCAGAAGGCTTGCTGGGCTGGGTTGTAGTTGAAGGTGGATGGCACGTGGGGTCTCTCCTCTAGCTTCTCGTATTCCAGATGAAACTCCTAGAAAGGGAGGGGAGGAACAAGGGTTTTAGGGatggtagtggataagggtagtggataagggtagtggataagggtagtggataagggtagtggataagggtagtggacaacggtagtggacaacggtagtggacgacggtagtggacgacggtagtggacgacggtagtggacgacggtagtggataagggtagtggacaacggtagtggacgacggtagtggacgacggtagtggacgacggtagtggacaacggtagtggacaacggtagtggacaacggtagtggacaacggtagtggacaacggtagtggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505604 lncRNA downstream 2858 66299449 ~ 66299659 (-) True G1319365
TU1505597 lncRNA downstream 36342 66265600 ~ 66266175 (-) True G1319358
TU1505576 lncRNA downstream 88917 66212725 ~ 66213600 (-) True G1319340
TU1505566 lncRNA downstream 110983 66190889 ~ 66191534 (-) True G1319331
TU1505553 lncRNA downstream 124344 66177492 ~ 66178173 (-) True G1319321
TU1505609 lncRNA upstream 77 66303919 ~ 66304437 (-) False G1319366
TU1505612 lncRNA upstream 77 66303919 ~ 66304358 (-) False G1319366
TU1505606 lncRNA upstream 161 66304003 ~ 66304437 (-) False G1319366
TU1505610 lncRNA upstream 161 66304003 ~ 66304358 (-) True G1319366
TU1505615 lncRNA upstream 5947 66309789 ~ 66309993 (-) True G1319369
XM_036944994.1 mRNA downstream 254618 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 254619 66033061 ~ 66047898 (-) False LOC110499708
XM_036944990.1 mRNA downstream 293051 65987932 ~ 66009466 (-) False LOC110500955
XR_005036194.1 mRNA upstream 109493 66413335 ~ 66416152 (-) False LOC110519161
XM_036945007.1 mRNA upstream 113612 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 113612 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 215876 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 261076 66564918 ~ 66630601 (-) False LOC110519130
TU1505596 other downstream 20409 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 829353 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1151117 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1151117 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1817199 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 504605 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 552337 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 559999 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 657109 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 776939 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile