RNA id: TU1505612


Basic Information

Item Value
RNA id TU1505612
length 440
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G1319366
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66302517 ~ 66304437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCTTTCTCCAAATCGCATCCCTCCAAAACTACCATCACATGGGTGTTCTTATTGGCTCACTGAGAATGTATCTGACCCTTGATTGTAACGCTTGGTGTTCTTCATTGTTTGCTGTGGTTGTTGAATTGAAAGTGTTCAGGGCGTGAGGCATGGTCCCCTGTCCTGACCAGTTATTGTCGTCCTCTATCCACTGGCTCCAGTACAGTTTTAAtccaggttgttgttgttgttgttgttgttaggcaTGGTCCCCAGAACAGTCCTGTTTTATCCACGTTGTACAGTACGTCCAGTATTGCGTCGCTCCGTGCTCACCTCCTAAAAACGAGGTACAGCCGGGGCGACagtctgtttttatttatttttaaatcttcTCCAAAATAGATgtcatatatataatatatacacatcacacacatctCTTTATTCATCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505611 lncRNA downstream 77 66302517 ~ 66303842 (-) False G1319366
TU1505605 lncRNA downstream 77 66302835 ~ 66303842 (-) False G1319366
TU1505607 lncRNA downstream 314 66302835 ~ 66303605 (-) False G1319366
TU1505604 lncRNA downstream 4260 66299449 ~ 66299659 (-) True G1319365
TU1505597 lncRNA downstream 37744 66265600 ~ 66266175 (-) True G1319358
TU1505615 lncRNA upstream 5431 66309789 ~ 66309993 (-) True G1319369
TU1505617 lncRNA upstream 6669 66311027 ~ 66311450 (-) True G1319371
TU1505619 lncRNA upstream 13435 66317793 ~ 66318138 (-) True G1319373
TU1505620 lncRNA upstream 14412 66318770 ~ 66319005 (-) True G1319374
TU1505647 lncRNA upstream 75839 66380197 ~ 66380647 (-) True G1319399
XM_036944994.1 mRNA downstream 256020 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 256021 66033061 ~ 66047898 (-) False LOC110499708
XM_036944990.1 mRNA downstream 294453 65987932 ~ 66009466 (-) False LOC110500955
XR_005036194.1 mRNA upstream 108977 66413335 ~ 66416152 (-) False LOC110519161
XM_036945007.1 mRNA upstream 113096 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 113096 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 215360 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 260560 66564918 ~ 66630601 (-) False LOC110519130
TU1505596 other downstream 21811 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 830755 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1152519 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1152519 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1818601 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 504089 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 551821 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 559483 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 656593 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 776423 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile