RNA id: TU1505617


Basic Information

Item Value
RNA id TU1505617
length 424
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1319371
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66311027 ~ 66311450 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgcaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttaagctcatacaaggagaagactgatcagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505615 lncRNA downstream 1034 66309789 ~ 66309993 (-) True G1319369
TU1505609 lncRNA downstream 6590 66303919 ~ 66304437 (-) False G1319366
TU1505606 lncRNA downstream 6590 66304003 ~ 66304437 (-) False G1319366
TU1505608 lncRNA downstream 6669 66302835 ~ 66304358 (-) False G1319366
TU1505612 lncRNA downstream 6669 66303919 ~ 66304358 (-) False G1319366
TU1505619 lncRNA upstream 6343 66317793 ~ 66318138 (-) True G1319373
TU1505620 lncRNA upstream 7320 66318770 ~ 66319005 (-) True G1319374
TU1505647 lncRNA upstream 68747 66380197 ~ 66380647 (-) True G1319399
TU1505654 lncRNA upstream 92087 66403537 ~ 66404855 (-) True G1319406
TU1505655 lncRNA upstream 97783 66409233 ~ 66409499 (-) True G1319407
XM_036944994.1 mRNA downstream 263128 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 263129 66033061 ~ 66047898 (-) False LOC110499708
XM_036944990.1 mRNA downstream 301561 65987932 ~ 66009466 (-) False LOC110500955
XR_005036194.1 mRNA upstream 101885 66413335 ~ 66416152 (-) False LOC110519161
XM_036945007.1 mRNA upstream 106004 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA upstream 106004 66417454 ~ 66513524 (-) True LOC118938831
XM_036945009.1 mRNA upstream 208268 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 253468 66564918 ~ 66630601 (-) False LOC110519130
TU1505596 other downstream 28919 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 837863 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1159627 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1159627 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1825709 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 496997 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 544729 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 552391 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 649501 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 769331 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile