RNA id: TU1505891


Basic Information

Item Value
RNA id TU1505891
length 557
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1319589
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66477813 ~ 66478369 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcagagacagtcattatagctgtatcagagacagtcattattactgtatcagagacagtcattatcgctgtatcagagacagtcattatcgctgtatcagagacagtcattatcgctgtatcagagacagtcattatcactgtatcagagacagtcattatcgctgtatcagagacagtcattatagctgtatcagagacagtcattattactgtatcagagacagtcattatcgctgtatcagagacagtcattatcactgtatcagagacagtcattattaCTGTGTCAGAGATAGTCATTATtactgtatcagagacagtcagtatcactgtatcagagacagtcataATTACTGTATCAGAGATATTCATTAtcactgtatcagagacagtcattattaCTGTGTCAGAGAAAGTCATTATTACTGTATCATagacagtcattatcactgtatcagagacagtcattatcgctgtatcagagacagtcattatcactgtatCAGAGTCATTCATTATCACTTtgtcagagacagtcattatcactgtgtCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505867 lncRNA downstream 48948 66427794 ~ 66428865 (-) True G1319566
TU1505843 lncRNA downstream 61562 66413368 ~ 66416251 (-) False LOC110519161
TU1505844 lncRNA downstream 61562 66413368 ~ 66416251 (-) False LOC110519161
TU1505845 lncRNA downstream 61562 66413368 ~ 66416251 (-) False LOC110519161
TU1505846 lncRNA downstream 61562 66413368 ~ 66416251 (-) True LOC110519161
TU1505899 lncRNA upstream 29441 66507810 ~ 66508351 (-) True G1319595
TU1505857 lncRNA upstream 35910 66514279 ~ 66516219 (-) False G1319560
TU1505858 lncRNA upstream 35910 66514279 ~ 66516219 (-) False G1319560
TU1505859 lncRNA upstream 35910 66514279 ~ 66516219 (-) True G1319560
TU1505863 lncRNA upstream 39363 66517732 ~ 66518664 (-) False G1319563
XR_005036194.1 mRNA downstream 61661 66413335 ~ 66416152 (-) False LOC110519161
XM_036944994.1 mRNA downstream 429914 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 429915 66033061 ~ 66047898 (-) False LOC110499708
XM_036944983.1 mRNA downstream 468347 65996639 ~ 66009466 (-) False LOC110500955
XM_036945009.1 mRNA upstream 41349 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 86549 66564918 ~ 66630601 (-) False LOC110519130
XM_036945010.1 mRNA upstream 176829 66655198 ~ 66713032 (-) False LOC110501008
XM_036945025.1 mRNA upstream 330040 66808409 ~ 66895359 (-) False LOC110490781
XM_036945023.1 mRNA upstream 330040 66808409 ~ 66895711 (-) False LOC110490781
TU1505596 other downstream 195705 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1004649 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1326413 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1326413 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 1992495 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 330078 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 377810 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 385472 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 482582 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 602412 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile