RNA id: TU1505858


Basic Information

Item Value
RNA id TU1505858
length 1879
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G1319560
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66514279 ~ 66516219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGGCATATCTATAAGGACCATTAAACATAATGTGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAACATAATGTGGACAGGCATATCTATAAGGGCCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAACATAATGTGGGACAGGCATATCTATAAGGACCATTAAATATAATGTGGACAGGCATATCTATAAGGACCATTAAACATATTGTGTTCAGGCATATCTATAAGGACCATTAAATATATTGTGGTCAGGCATATCTATAAGGACCACGTAGGAATCTATCTGGCTGCTGAAAATGTGCAAGTGTTCGACCAAGGAGGATACAGATGGTTGTTTGTTGTGTGACAATGAAttgagaaacatttcactttttGTACGTACTTATGGatgatttttgtattattatttgtgaTTAAAAAAGAAGAAAGGTTTTTGAATACATAAAACGTTAACCGTCCGTGCACATTGTTTACTGTTAGTAGAGTTGTATCTATCCACTATGTGGGCTTAATGGCCATATTAGCCAGGAGGACAAAGGTTTGTGTTCCAAATGGGACCCTAGAGCCTTtaaagtgcactacatttgaccaggcccatagagctctgatcaCAAGTAGTGAACTATCTAGAGAAGAGGGTGGGGAGGATGTACTACTAATGGACTTGAATGTTGTGATTAGTTCTCTCCTTGTCCGCCATAATAACCACAGTAGTAACTATTTAAAAATCTGATATAAGCTGTACATATTGTATGTATGTTTTAATAATGAAATGTACATGTTTGGAGGGCAGCACAAGGAGAGGTGCAGGCCTTAAACAGCTGTTTGTGTTGTTCCTACTACTGAGGGGAAAAGGGGGTTTTATCTTCTACTGTACGACTGGACATCGGTTCACTGAATACTTGCTGGTGCGGAGGAAATATGTTGCCATTAATCTGTATTCCAActcttgtagtgtttattcaaAAAAACAACAGACCAAAACTAAAATCTAAAACTTAGCTATAACTAAAACAGTGTGTTGAGTAATTGTTTTGGTGGTTTACTGAGGGTTTAGTACTGAAGCCATGCTATGAACTTTagactatattactgtactgtacatggaATATTCCTGGATGTTACTCTACTACCCTGTGTTGTGCAGAGTTGTACTACGTTGGGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACATTGTACTACCTTGAGAATACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACGTTGAGAGTTGTACTACGTTGAGAGTTGTACTACCTTGAGAGTACTACCTTGAGAGTACTACATTGAGAGTTGTACTACCTTGACTAGACAGTTAGCGGCTTGAAGATGCCACTAAACTGCCCTGTACCTAAACAGAAAATGATACTGTACCTAATGAAACTGCTGATACTGTACCTAATGAAACTGCtgatactgtatctactgtaagaCGTTGACTTTATAGTCCCTACTGCCAATAAAGAGAAACTGTTTCGAACGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1505899 lncRNA downstream 5928 66507810 ~ 66508351 (-) True G1319595
TU1505891 lncRNA downstream 35910 66477813 ~ 66478369 (-) True G1319589
TU1505867 lncRNA downstream 85414 66427794 ~ 66428865 (-) True G1319566
TU1505845 lncRNA downstream 98028 66413368 ~ 66416251 (-) False LOC110519161
TU1505863 lncRNA upstream 1513 66517732 ~ 66518664 (-) False G1319563
TU1505864 lncRNA upstream 1620 66517839 ~ 66518664 (-) True G1319563
TU1505851 lncRNA upstream 2554 66518773 ~ 66526280 (-) True LOC110515929
TU1505907 lncRNA upstream 28709 66544928 ~ 66547948 (-) True G1319602
TU1505854 lncRNA upstream 35618 66551837 ~ 66562591 (-) False G1319559
XM_036945007.1 mRNA downstream 755 66417454 ~ 66513524 (-) False LOC118938831
XM_036945008.1 mRNA downstream 755 66417454 ~ 66513524 (-) True LOC118938831
XR_005036194.1 mRNA downstream 98127 66413335 ~ 66416152 (-) False LOC110519161
XM_036944994.1 mRNA downstream 466380 66033061 ~ 66047899 (-) True LOC110499708
XM_036944993.1 mRNA downstream 466381 66033061 ~ 66047898 (-) False LOC110499708
XM_036945009.1 mRNA upstream 3499 66519718 ~ 66553585 (-) False LOC110515929
XM_036945556.1 mRNA upstream 48699 66564918 ~ 66630601 (-) False LOC110519130
XM_036945010.1 mRNA upstream 138979 66655198 ~ 66713032 (-) False LOC110501008
XM_036945025.1 mRNA upstream 292190 66808409 ~ 66895359 (-) False LOC110490781
XM_036945023.1 mRNA upstream 292190 66808409 ~ 66895711 (-) False LOC110490781
TU1505596 other downstream 232171 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1041115 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1362879 65068277 ~ 65151400 (-) False G1318477
TU1504422 other downstream 1362879 65084759 ~ 65151400 (-) False G1318477
TU1504148 other downstream 2028961 64482827 ~ 64485318 (-) False LOC110499867
TU1506125 other upstream 292228 66808447 ~ 66895692 (-) False LOC110490781
TU1506127 other upstream 339960 66856179 ~ 66862281 (-) True G1319781
TU1506128 other upstream 347622 66863841 ~ 66867740 (-) True LOC110490781
TU1506236 other upstream 444732 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 564562 67080781 ~ 67084605 (-) True LOC110511902

Expression Profile