RNA id: TU1506170


Basic Information

Item Value
RNA id TU1506170
length 1347
lncRNA type intronic
GC content 0.37
exon number 6
gene id G1319818
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66869294 ~ 66884898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGTAGGTTTTTTTtgctattagtttggaggtgttgcttggtttcttactattagtttggaggtgttgtaGGTTTTTTTtgctattagtttagaggtgttgcagggtttcttactattagtttagaggtgttgcagggtttcttactattagtttggaggtgttgcagggtttcttactattagtttagaggtgttgcagggtttcttactattagtttggaggtgttgcagggtttcttactattagtttggaggtgttgcagggttcttactattagtttggaggtgttgctgggttttttactattagtttagaggtgttgcagggttttttactattagtttagaggtgttgcttggtttcttactattagtttagaggtgttgcttggttttttactattagtttggaggtgttgcttggtttcttactattagtttagaggtgttgcagggtttcttactattagtttagaggtgttgcagggtttcttactattagtttggaggtgttgcagggttttttactattagtttggaggtgttgcagggttttttactattagtttagaggtgttgcagggtttcttactattagtttggaggtgttgcagggttttttactattagtttagaggtgttgcttggttttttactattagtttggaggtgttgcagggttttttactattagtttggaggtgttgcagggttttttactattagtttggaggtgttgcagggttttttactattagtttagaggtgttgcttggtttcttactattagtttagaggtgttgcagggttttttactattagtttagaggtgttgcagggtttttatactattagtttggaggtgttgctgggtttcttactattagtttagaggtgttgcttggttttttactattagtttggaggtgttgcagggtttttatactattagtttggaggtgttgctgggtttcttactattagtttagaggtgttgcttggttttttactattagtttggaggtgttgcttggtttcttactattagtttggaggtgttgcttggttttttactattagtttggaggtgttgcagggttttttactattagtttggaggtgttgcagggttatttactattagtttggaggtgttgctgggtttcttactattagttttgaggtgttgcttggttttttactattagtttggaggtgttgcagggttattTACTAtgagtttggaggtgttgctgggtttcttactattagtttggaggtgttgctgggtttcttactattagtttggaggtgttgcagggttatttactattagtttggagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506154 lncRNA downstream 39975 66820432 ~ 66829319 (-) True G1319803
TU1506126 lncRNA downstream 56170 66808447 ~ 66813124 (-) False LOC110490781
TU1506141 lncRNA downstream 77293 66788845 ~ 66792001 (-) True G1319793
TU1505944 lncRNA downstream 206376 66655198 ~ 66662918 (-) True LOC110501008
TU1505914 lncRNA downstream 230669 66629402 ~ 66638625 (-) True LOC110519130
TU1506210 lncRNA upstream 5235 66890133 ~ 66890818 (-) True G1319826
TU1506214 lncRNA upstream 15999 66900897 ~ 66901482 (-) True G1319829
TU1506168 lncRNA upstream 27302 66912200 ~ 66919402 (-) True G1319817
TU1506229 lncRNA upstream 59372 66944270 ~ 66944941 (-) True G1319840
TU1506230 lncRNA upstream 60348 66945246 ~ 66945497 (-) True G1319841
XM_036945010.1 mRNA downstream 156262 66655198 ~ 66713032 (-) False LOC110501008
XM_036945556.1 mRNA downstream 238693 66564918 ~ 66630601 (-) False LOC110519130
XM_036945009.1 mRNA downstream 315709 66519718 ~ 66553585 (-) False LOC110515929
XM_036945007.1 mRNA downstream 355770 66417454 ~ 66513524 (-) False LOC118938831
XM_036945011.1 mRNA upstream 39144 66924042 ~ 66940668 (-) False LOC110490597
XM_036945012.1 mRNA upstream 39144 66924042 ~ 66940668 (-) False LOC110490597
XR_005036195.1 mRNA upstream 39144 66924042 ~ 66940668 (-) False LOC110490597
XR_005036196.1 mRNA upstream 39145 66924043 ~ 66940668 (-) False LOC110490597
XR_005036197.1 mRNA upstream 39846 66924744 ~ 66940668 (-) True LOC110490597
TU1506128 other downstream 1554 66863841 ~ 66867740 (-) True LOC110490781
TU1506127 other downstream 7013 66856179 ~ 66862281 (-) True G1319781
TU1505596 other downstream 587186 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1396130 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1717894 65068277 ~ 65151400 (-) False G1318477
TU1506236 other upstream 76053 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 195883 67080781 ~ 67084605 (-) True LOC110511902
TU1506612 other upstream 308218 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 908127 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 1187503 68072401 ~ 68176382 (-) True LOC110513021

Expression Profile