RNA id: TU1506173


Basic Information

Item Value
RNA id TU1506173
length 558
lncRNA type intronic
GC content 0.37
exon number 3
gene id G1319818
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66869294 ~ 66884898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTTGCAGGGTtatttactgaggactggttttGATGTGTTGCAGGGTTTTGACTATTAGTTTATAGgtgttgcttggtttcttactattagtttggaggtgttgcttggttttttgcaattagtttagaggtgttgctgggtttcttactattagtttggaggtgttgcagggttttttactattagtttggaggtgttgcttggttttttgctattagtttagaggtgttgcagggttttttactattagtttggaggtgttgcagggttatttactattagtttggaggtgttgcagggtttcttactattagtttggaggtgttgcttggttttttactattagtttggaggtgttgcagggttatttactgaggactggtttggatGTGTTGCAGGGTTTTGACTATTAGTTTATAGgtgttgcattttttttttttttcgaggactggtttggaggtgttgcagggttatttactgaggactggttttGATGTGTTGCCGGGTTTTGACTATTAGTTTATAGGTGTTGcagttttttaaaagttttttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506154 lncRNA downstream 42338 66820432 ~ 66829319 (-) True G1319803
TU1506126 lncRNA downstream 58533 66808447 ~ 66813124 (-) False LOC110490781
TU1506141 lncRNA downstream 79656 66788845 ~ 66792001 (-) True G1319793
TU1505944 lncRNA downstream 208739 66655198 ~ 66662918 (-) True LOC110501008
TU1505914 lncRNA downstream 233032 66629402 ~ 66638625 (-) True LOC110519130
TU1506171 lncRNA upstream 639 66883319 ~ 66884898 (-) True G1319818
TU1506210 lncRNA upstream 7453 66890133 ~ 66890818 (-) True G1319826
TU1506214 lncRNA upstream 18217 66900897 ~ 66901482 (-) True G1319829
TU1506168 lncRNA upstream 29520 66912200 ~ 66919402 (-) True G1319817
TU1506229 lncRNA upstream 61590 66944270 ~ 66944941 (-) True G1319840
XM_036945010.1 mRNA downstream 158625 66655198 ~ 66713032 (-) False LOC110501008
XM_036945556.1 mRNA downstream 241056 66564918 ~ 66630601 (-) False LOC110519130
XM_036945009.1 mRNA downstream 318072 66519718 ~ 66553585 (-) False LOC110515929
XM_036945007.1 mRNA downstream 358133 66417454 ~ 66513524 (-) False LOC118938831
XM_036945011.1 mRNA upstream 41362 66924042 ~ 66940668 (-) False LOC110490597
XM_036945012.1 mRNA upstream 41362 66924042 ~ 66940668 (-) False LOC110490597
XR_005036195.1 mRNA upstream 41362 66924042 ~ 66940668 (-) False LOC110490597
XR_005036196.1 mRNA upstream 41363 66924043 ~ 66940668 (-) False LOC110490597
XR_005036197.1 mRNA upstream 42064 66924744 ~ 66940668 (-) True LOC110490597
TU1506128 other downstream 3917 66863841 ~ 66867740 (-) True LOC110490781
TU1506127 other downstream 9376 66856179 ~ 66862281 (-) True G1319781
TU1505596 other downstream 589549 66279045 ~ 66282108 (-) True G1319357
TU1505028 other downstream 1398493 65469967 ~ 65473164 (-) True G1318935
TU1504423 other downstream 1720257 65068277 ~ 65151400 (-) False G1318477
TU1506236 other upstream 78271 66960951 ~ 66961304 (-) True G1319847
TU1506555 other upstream 198101 67080781 ~ 67084605 (-) True LOC110511902
TU1506612 other upstream 310436 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 910345 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 1189721 68072401 ~ 68176382 (-) True LOC110513021

Expression Profile