RNA id: TU1506565


Basic Information

Item Value
RNA id TU1506565
length 564
lncRNA type intronic
GC content 0.39
exon number 2
gene id G1320096
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67094413 ~ 67095337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatctttcctccctactaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatatttcctctctactaccatctttattccctactaccatctttattccctactaccatctttcctccctactaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatctttcctctctactaccatctttattccctactaccatctttattccctactaccatctttcctctctactaccatctttattccctactaccatctttactccctactaccatctttattccctactaccatctttattccctactaccatctttattccctactaccatctttcctctctactaccatctttcctccctactaccatctttcctctctactaccatctttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506562 lncRNA downstream 146 67093095 ~ 67094267 (-) True G1320095
TU1506557 lncRNA downstream 24442 67069232 ~ 67069971 (-) True G1320090
TU1506501 lncRNA downstream 64727 67026419 ~ 67029686 (-) True G1320057
TU1506470 lncRNA downstream 97033 66996615 ~ 66997380 (-) True G1320031
TU1506238 lncRNA downstream 131358 66962738 ~ 66963055 (-) True G1319849
TU1506568 lncRNA upstream 1610 67096947 ~ 67097393 (-) False G1320098
TU1506569 lncRNA upstream 1610 67096947 ~ 67097393 (-) True G1320098
TU1506574 lncRNA upstream 9474 67104811 ~ 67105652 (-) True G1320102
TU1506543 lncRNA upstream 17014 67112351 ~ 67155292 (-) False G1320083
TU1506545 lncRNA upstream 57659 67152996 ~ 67155292 (-) False G1320083
XM_036945033.1 mRNA downstream 9718 67079306 ~ 67084695 (-) False LOC110511902
XM_036945032.1 mRNA downstream 9719 67079306 ~ 67084694 (-) False LOC110511902
XM_036945030.1 mRNA downstream 18779 67072008 ~ 67075634 (-) False LOC118938832
XM_036945031.1 mRNA downstream 18779 67072164 ~ 67075634 (-) True LOC118938832
XM_036945029.1 mRNA downstream 18780 67071314 ~ 67075633 (-) False LOC118938832
XM_036945041.1 mRNA upstream 60087 67155424 ~ 67350136 (-) False LOC110501001
XM_036945037.1 mRNA upstream 60087 67155424 ~ 67350716 (-) False LOC110501001
XM_036945038.1 mRNA upstream 61256 67156593 ~ 67350715 (-) False LOC110501001
XM_036945040.1 mRNA upstream 61394 67156731 ~ 67350716 (-) True LOC110501001
XM_036945043.1 mRNA upstream 276045 67371382 ~ 67378234 (-) False LOC110499840
TU1506555 other downstream 9808 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 133109 66960951 ~ 66961304 (-) True G1319847
TU1506125 other downstream 198721 66808447 ~ 66895692 (-) False LOC110490781
TU1506612 other upstream 97779 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 697688 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 977064 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1935689 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 2060189 69155526 ~ 69156999 (-) True LOC110490790

Expression Profile