RNA id: TU1506545


Basic Information

Item Value
RNA id TU1506545
length 2187
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1320083
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67112351 ~ 67155292 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctcgctctctctctcgctctctctctgtctctcgctctctctgtctctctctcgtctctctgtctctctcttgtctctctgtgtctctctctctctgtgatctgAGGAGGTGTGTTATTTGTTACTCTCTGTGGtgttgtttttctttattttctattaTCAGGAAACACACTTCCACTGTCATCCTCCACAGATCCCCCGTCTAGTTACTGTAGCTAAGGATGATGGCATATGAAGGCAAGGCAACCAATCAGAAGGCTTACTGCCAAACCAAAAGCCAATAACAGCCCAGGAAATAAGCTCTTTATTTGCTGTCGTCATTGTTATATTCAGCTCAGGAATTCTTGACGTAAATGTTCTGGAATGTTCTGGAATGGTTTAGATTGCACATTTATTGTGTGCATGTGCTGTTATGCTGAGAGCATAACTAGGACCAGGAATAACTCCAGGCCCTAATCACAGCCAATAAGACTGGCAATTCCCACGATTCGCCCTTTGCCAGTCTGTAGATCTGTCTGCCAATACAATCCAACCAAAATGATTTCCCAGTGTATTTTGGAGTGCAACAAACTCATTATGTTAAACATATGCACTGGACAAACATGACACTTGTAATTTCTCAATGCTGCTTCTTCTGTGTATCAAGATAGCCTTTTTATTTGACTTTTTTAAAAGCTTAGTACTCCAATATTCACATCATTCATAACAGCACTCAAATGTTTTGTCTGTTATTTGCTCATCTGTATTGAAGGGGACAAGACTAATCTTAATCTCTCACTTTTCGTTCTGCTTAGTTTGTTAAATATCAAATTGGGTTGTCGGAGAGGACAACCGAGTTATCTCCATCCATGTAAATGCTAAGGTCAACCAAATGTAATTTATCTGAAATAGTTCATCGACTGCTCTGGTCTGAATGTGCCCATGTTTAAAACATGAGCTACATCAGGTGGTTTGGAATATATATTCGGCTGGCCCTCCTGGCCTCCTCTCATTCAGCCCTGCCGCTAGTTCAGATAATTACCAACCTGCTGTGTGGAGGTCTCCAACTCATCTCCAATCTCAGTCTACTTTATCTGTGAGGAGCGAGCCTCTGGAAAAACAATCTATTGCACCACGCTGCTGTGGGGGCTGagaggttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatatgtatcccatatctcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagattgTCCCTTGCCCTCCGCAGCATCGTGACTCCCGCTCACCAAGAGGAGATCTCACACGAATCTCTTCAGCGGAGATCCTTCCCCTTTTTAATGTCAGTTTCAATAGACACAAGGCTCTGTTATATTAACTGCTGAAGGGTGTTTAAAACAGGGTTACATATTTCAAATACTTCACTGTGTCAGTGTCCCAAATAGGGCactgttccctacatagtcccCTACTTTTgacctataggccctggtcaaaattagtgcactggaaagggaatagggtgccatttgggacgctcaGTGTCTCTTTAGGGTTTAACAGCCTATGGCAAACCAGAGAGCTGTGTCTGTATCCATTTCACACTCTAAGAACAAGTTAATCTGTTTTCTGTTCCTTTCGTCGTTGTCAATTCAACATGTGGAGTGAATGTGATTCTTCAACCCGGCATGACATTGGTTTTGTATGTATAGGAGGCCTATTGATACTGTGATACATGCTTTCCCTTCAAAGTCAACTTTGTTGTGCATGACTGAATTTGACAGAGTGCAGCACAGGGGATAAATATGTCATTATTCTGTCCGTTCACCCACAATGCATCAGAATGTGAAAAGCCTATCATTGTCTTTGTGGGCAAAAATGTGTCTCCCATGAATGGAGTCTCAAGCAGCAAAAAGGAGGTTTAGTGGAATTGATTGAATGCTACTGTAAATTCGTTCAAATGACTAACCTTTTTCTTTGGATATAGACGAAAGGGCTCTGTGATGCTTAACTCTTCCCTTCTGGGGGTTTTCTGTCACCTATGTTGTTCTATTGTCGCACAATGAGGAAGGGGGCCTTTTAGGAGGACAGGCTTGTTGAATTTGGGCATAGGTTTTAACCATCGCCTCCCTCGGTTGGCTTTGAATCCCTCTTTACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506574 lncRNA downstream 47344 67104811 ~ 67105652 (-) True G1320102
TU1506568 lncRNA downstream 55603 67096947 ~ 67097393 (-) False G1320098
TU1506569 lncRNA downstream 55603 67096947 ~ 67097393 (-) True G1320098
TU1506565 lncRNA downstream 57659 67094413 ~ 67095337 (-) True G1320096
TU1506562 lncRNA downstream 58729 67093095 ~ 67094267 (-) True G1320095
TU1506605 lncRNA upstream 21288 67176580 ~ 67176811 (-) True G1320132
TU1506608 lncRNA upstream 27552 67182844 ~ 67183284 (-) True G1320135
TU1506616 lncRNA upstream 58675 67213967 ~ 67214212 (-) True G1320143
TU1506620 lncRNA upstream 64877 67220169 ~ 67220483 (-) True G1320147
TU1506629 lncRNA upstream 73174 67228466 ~ 67228685 (-) True G1320150
XM_036945033.1 mRNA downstream 68301 67079306 ~ 67084695 (-) False LOC110511902
XM_036945032.1 mRNA downstream 68302 67079306 ~ 67084694 (-) False LOC110511902
XM_036945030.1 mRNA downstream 77362 67072008 ~ 67075634 (-) False LOC118938832
XM_036945031.1 mRNA downstream 77362 67072164 ~ 67075634 (-) True LOC118938832
XM_036945029.1 mRNA downstream 77363 67071314 ~ 67075633 (-) False LOC118938832
XM_036945041.1 mRNA upstream 132 67155424 ~ 67350136 (-) False LOC110501001
XM_036945037.1 mRNA upstream 132 67155424 ~ 67350716 (-) False LOC110501001
XM_036945038.1 mRNA upstream 1301 67156593 ~ 67350715 (-) False LOC110501001
XM_036945040.1 mRNA upstream 1439 67156731 ~ 67350716 (-) True LOC110501001
XM_036945043.1 mRNA upstream 216090 67371382 ~ 67378234 (-) False LOC110499840
TU1506555 other downstream 68391 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 191692 66960951 ~ 66961304 (-) True G1319847
TU1506125 other downstream 257304 66808447 ~ 66895692 (-) False LOC110490781
TU1506612 other upstream 37824 67193116 ~ 67193493 (-) True G1320139
TU1507110 other upstream 637733 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 917109 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1875734 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 2000234 69155526 ~ 69156999 (-) True LOC110490790

Expression Profile