RNA id: TU1506856


Basic Information

Item Value
RNA id TU1506856
length 2946
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1320314
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67407082 ~ 67410521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTAGTCAAATGGTTTTCATATAGAGGTCAAGGGGGTCATTTTGACTTGGTACTGTcagaaatggtaccctattccagATGTAGTGCACCCTATGGGTTATGGTCACAAGTAAtacactacatagggattagggtgccatttcagatgcacacTTGAAATACTTCAAACATTCAAATGGCTCAAATAATTCATACTACTGTATTACCACCTCCCGATATGATCCTCTCTACTGTAGTACTATATTATTCTGTGATGTCGCAGTGTCACATTGTGATTGTGGAAATCAGCTTCAAAAGGGGCACAAGGGAAAATGTCATTCTAAAGACAGCATACAGTAATGTCTAGCATTTCCCTTTGCCTTGGTGAATTCTGAAGGCACAAAAACCTTTCATTATACAGTAGATATGGGTTTGAAGAAACCTCATAATTCACATGATCTGTTCTGTACCTGTAGGTTAGTCCAAACGTTGTTTAAATGTTGTTTCAGTGTTGGTGCTAGACTCCGTGCATGACCCATGCAGACCTAGATTGGCCCATGACATGATTTGGTACTGGTCACATTTGCACAACCAAAATATCAATGACAGTAACAACATTTAAACGTATCATAACAAAATTCAAGACAGGAGTCCATGTAAAACCTAAAGGGCCAGCCCTCTTCCACTGTCTCAACTGTTTGGTGATGATGACAGAAGGACAGAAGAACTAGCACCTACTACACATCATATGTTCATTCCCTTGTATGTGTATACGGAtcagggttggagtcaattccatttcaattggaatatcagtttacttcctgaattgaccgagtttaaatggaattgatcccaatAATCCCTGTTACAGGATCCCATAATCCCTGTTATGAATGACATAAAAAAAACACCTAGAAATAAATGCAGGACAGCAAAGTTCAGGTCACTGACCTGACATTCAGACGCACACTGATGATGGTGAGGACGATGACGATGGTGATGAAGAAGAGTATGAATGTTCAAGTTCAATGTGAACAGGTGTCCGGCACCTGAACAGAAACATGCCGTGTTGTCATCACTCAGTCAAGAGTGAAAGATATGGTAGCTTGTCAATGGAGTGTGTTTGTAAGTGGACCATACCAATAAGCACTCGTAGCGTGAACGGGGGGTGAACCTTCAAGGCCACAACCTCTCGatgaacacacacagatgaggTCATGATTTGTAAAGCTCACATCTTTTTCTCTGCAGTGGATTTTTGTGAAAAGATTTAAATACATACTCAGCTCTCAATCGTAACATTACTAAATCAACGTAGAACATCAACCTATATAAAATGAAAAACATGTATAATTAAAGTCATGATTaacaaatataaataacatacagaTATTTATCAAACACTGCAATGTTCTTGACTTCCCTTTTAGTGAACAGGGATCTGTTCAGCTTGGCTGTAAAATGGAACATTCTAGGAGCTCGATATCGTGCTTCACTCTCCTTTTCTATTGGATCCTACTTTGAACCTCAATGCTGATTGGTTGCTTAAGATGTCCGTGAAGGGTTGTTGTTCAAGACAAAAAATAACAAACTCCTTCGAACGAGCAAGGTACCAAGACATCTTTCAGTCTCCCTTTTAGTCTGCTCTCATACAAGCCTAGTACCAGGACACCTTGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACCTTGGTACCAGGACACTCATAGTCTAGTACCAGGACACCTTGGTACCAGGACACTCATAGCCTAGTACCAGGACACCTAGGTACCAGGACACTCATAGCCTAGTACCAGGACATCTAGGTACCAGGACACCCATAGCCTAGTACCAGGAGACCTAGGTACCAGGACATCTTGCTTCCTCCTTTCCTTTTTCCTTCTGTGTTTCTAGTCTTTCAGTCTGTTCTCTTAAGACTTCTATGAAAACCTCTTGGTTAGGATTGTTCCTTCTGTCTCTGTTTAACAAAGACTCAGTGGGGGCATTGGGCCCAGCTGCTCCCTATGTCACATTGAGTAGTCAAAACACAAAGAATCCTCCAGCCCCAGCTGAGACCGTTAGTAGACCTCCTctctgcactcacgcacacacacacacaaacacacacgcacgcacacaaacacacacatagtgagagtggatggaggacaggatagagagagggggtgtgtgGGGGCTTTCTCGGCTGGGTGGGTAACCATGGGTTACATTCTCATGCTAATGGTGAAGAAAGAGGTGGTAGTTTGCGGGTGGTTTGCTGGGGACGATCGCAGGGGGCTGGTGGGTTGTAAGCGAAAGGAAGGGAAGATTTATTAGGGGAGGGTCCCTTGAGTCTTATATAGCCCCTTCCCGAGGTGGGCAGTGTCCCACCCTCATACGCAGTGTGCCGCTCTTGTGCAACTGCCAGAGCTGGACAAACTCCTCAGGCATGGCGTGGAACCCGCTGAACGGCAGCACGTTATCGTAGTAGTGGTGGCTGACGGGCTGCTCGTCGAGCCCAACGCTGAATGGCCAGAAGCCGTAGGCCGTCACCTCCTCACACAGCCCCAGCGCCAGGCTGACCAGGAAGAGGCCTGTGGACAGGCGCTTGGCATGCACTCCGCGACCCTTCCAGAACTTTCCCACGGTCCTGAGAAACTCGGGGTTGGCAAACAGCATGGTGAGGTTGGACGAGGTGTCGGCAAGGGCGTAGTGTGCCCGCAGGGAGGGGTCGGTGCCCGGCTTCATGGAGAAGGCTGGCATGTAAATGTAGCTGGAGCCGTAGGCCTTCATGCTCTCCACAAAGCTTTTCCGCGACCAAAGAAGGTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506715 lncRNA downstream 46155 67360528 ~ 67360927 (-) True G1320230
TU1506665 lncRNA downstream 105043 67288856 ~ 67302039 (-) True G1320183
TU1506674 lncRNA downstream 108968 67297211 ~ 67298114 (-) True G1320190
TU1506644 lncRNA downstream 149892 67256031 ~ 67257190 (-) True G1320165
TU1506643 lncRNA downstream 151687 67255077 ~ 67255395 (-) True G1320164
TU1506872 lncRNA upstream 22939 67433460 ~ 67433948 (-) True G1320330
TU1506887 lncRNA upstream 52055 67462576 ~ 67463305 (-) True G1320342
TU1506888 lncRNA upstream 54437 67464958 ~ 67465332 (-) True G1320343
TU1506889 lncRNA upstream 55761 67466282 ~ 67466563 (-) True G1320344
TU1506851 lncRNA upstream 56486 67467007 ~ 67472780 (-) True G1320312
XM_036945045.1 mRNA downstream 28387 67371382 ~ 67378695 (-) True LOC110499840
XM_036945044.1 mRNA downstream 28491 67371382 ~ 67378591 (-) False LOC110499840
XM_036945042.1 mRNA downstream 28513 67371382 ~ 67378569 (-) False LOC110499840
XM_036945043.1 mRNA downstream 28848 67371382 ~ 67378234 (-) False LOC110499840
XM_036945040.1 mRNA downstream 56366 67156731 ~ 67350716 (-) True LOC110501001
XM_036945060.1 mRNA upstream 374696 67785217 ~ 67797863 (-) False LOC118938833
XM_036945073.1 mRNA upstream 390553 67801074 ~ 67803118 (-) True LOC118938834
XM_036945071.1 mRNA upstream 400062 67810583 ~ 67922050 (-) False LOC110501000
XM_036945072.1 mRNA upstream 400062 67810583 ~ 67922050 (-) False LOC110501000
XM_036945064.1 mRNA upstream 400062 67810583 ~ 67922051 (-) False LOC110501000
TU1506612 other downstream 213589 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 322477 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 445778 66960951 ~ 66961304 (-) True G1319847
TU1506128 other downstream 539342 66863841 ~ 66867740 (-) True LOC110490781
TU1506127 other downstream 544801 66856179 ~ 66862281 (-) True G1319781
TU1507110 other upstream 382504 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 661880 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1620505 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 1745005 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 1809782 69220303 ~ 69223028 (-) True G1321729

Expression Profile