RNA id: TU1506895


Basic Information

Item Value
RNA id TU1506895
length 481
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1320350
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67481115 ~ 67481595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaatggattcaataaaaaaaaatcctcatcaatctacacacaataccacataattgtaacggttttcttccgctgaaggagaggaggaccaaaatgcagcgtggttagagttcaacatgtttaatcaaGACCATACACaagaacactacaaaacaataaatgtgaaaaccgaaacagtcctatctggtgcaatgacacaaagacagaagacaatcacccacaaaatacccaaagaacatggctgcctaaatatggttcccaatcagagacaacgacagacagctgcctctaattgagaaccaatctaggcaaccatagacatacaaaactacctagaaaggaaacagccccataaacatacaaaacccctagaccagaccaaaacacataaatcccccatatcacaccctgtcctaaccaaaataataaagaaaacaaagataactaaggccagggcgtaacaataatgacaaagcgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1506894 lncRNA downstream 50 67480706 ~ 67481065 (-) True G1320349
TU1506851 lncRNA downstream 8335 67467007 ~ 67472780 (-) True G1320312
TU1506889 lncRNA downstream 14552 67466282 ~ 67466563 (-) True G1320344
TU1506888 lncRNA downstream 15783 67464958 ~ 67465332 (-) True G1320343
TU1506887 lncRNA downstream 17810 67462576 ~ 67463305 (-) True G1320342
TU1506914 lncRNA upstream 63582 67545177 ~ 67545829 (-) True G1320369
TU1506915 lncRNA upstream 64298 67545893 ~ 67546149 (-) True G1320370
TU1507052 lncRNA upstream 168976 67650571 ~ 67651593 (-) True G1320478
TU1507095 lncRNA upstream 217592 67699187 ~ 67703881 (-) True G1320508
TU1507114 lncRNA upstream 252193 67733788 ~ 67734064 (-) True G1320523
XM_036945045.1 mRNA downstream 102420 67371382 ~ 67378695 (-) True LOC110499840
XM_036945044.1 mRNA downstream 102524 67371382 ~ 67378591 (-) False LOC110499840
XM_036945042.1 mRNA downstream 102546 67371382 ~ 67378569 (-) False LOC110499840
XM_036945043.1 mRNA downstream 102881 67371382 ~ 67378234 (-) False LOC110499840
XM_036945040.1 mRNA downstream 130399 67156731 ~ 67350716 (-) True LOC110501001
XM_036945060.1 mRNA upstream 303622 67785217 ~ 67797863 (-) False LOC118938833
XM_036945073.1 mRNA upstream 319479 67801074 ~ 67803118 (-) True LOC118938834
XM_036945071.1 mRNA upstream 328988 67810583 ~ 67922050 (-) False LOC110501000
XM_036945072.1 mRNA upstream 328988 67810583 ~ 67922050 (-) False LOC110501000
XM_036945064.1 mRNA upstream 328988 67810583 ~ 67922051 (-) False LOC110501000
TU1506612 other downstream 287622 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 396510 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 519811 66960951 ~ 66961304 (-) True G1319847
TU1506128 other downstream 613375 66863841 ~ 66867740 (-) True LOC110490781
TU1506127 other downstream 618834 66856179 ~ 66862281 (-) True G1319781
TU1507110 other upstream 311430 67793025 ~ 67797835 (-) True LOC118938833
TU1508038 other upstream 590806 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1549431 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 1673931 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 1738708 69220303 ~ 69223028 (-) True G1321729

Expression Profile