RNA id: TU1508046


Basic Information

Item Value
RNA id TU1508046
length 676
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1321246
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67932151 ~ 67932826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAATACTACAAATTCACTACAGTTGTTAACTTAGAACCAGTAAATGACAGAATACTACAAATTCACTACAGTTGTTAACTTAGAACCAGTAAATGACAGAATACTACAAATTCACTACAGTTGTTAACTTAGAACCAGTAGAATACTACAAATTCACTACAGTTGTTAACTTAGAACCAGAAAATGACAGAATACTACACATTCACTACTGTTGTTAACTTAGAACCAGTAAATGACTGAATACTACAAattcactacagtatactgttaaCACCGCCAAGCATTGGCTAATGGCTACCTTTACCTCCAGTTCCTGTCTCGTTCCCTGCTTCACCGATCAGTACTATGGGCCATTAACACCGTCCTCTAAATCATTAAGGATCTCGGTACCCTCTGTGTGGTGTAATCTGGTGCAAGGTGATACAGTTATTTGCTGATAACTTCTTTATTGACGAAAAATGTACTTgctacgactgtgatatgtggttgtctcaactAACTATCTTAAGATAAATGTAcgttgctctggataagtgtgtctgctaaatgactcaaatgtaaatgtgaaatgtTAGCCTAGAACCAGTAAATTACAGAATACTACAAATTCACTACTGTTGTTAACCTAGAACCAGTAAATTACAGAATACTACAAATTCACTACTGTTGTTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1507289 lncRNA downstream 20685 67911096 ~ 67911466 (-) True G1320640
TU1507277 lncRNA downstream 52560 67879338 ~ 67879591 (-) True G1320628
TU1507239 lncRNA downstream 92523 67839302 ~ 67839628 (-) True LOC110501000
TU1507261 lncRNA downstream 103214 67826790 ~ 67828937 (-) True G1320612
TU1507212 lncRNA downstream 121102 67810588 ~ 67811049 (-) False LOC110501000
TU1508048 lncRNA upstream 8178 67941004 ~ 67941204 (-) True G1321248
TU1508052 lncRNA upstream 14169 67946995 ~ 67947411 (-) True G1321252
TU1508053 lncRNA upstream 14865 67947691 ~ 67947987 (-) True G1321253
TU1508054 lncRNA upstream 15828 67948654 ~ 67949235 (-) True G1321254
TU1508055 lncRNA upstream 18285 67951111 ~ 67951338 (-) True G1321255
XM_036945064.1 mRNA downstream 10100 67810583 ~ 67922051 (-) False LOC110501000
XM_036945065.1 mRNA downstream 10100 67810583 ~ 67922051 (-) False LOC110501000
XM_036945066.1 mRNA downstream 10100 67810583 ~ 67922051 (-) False LOC110501000
XM_036945067.1 mRNA downstream 10100 67810583 ~ 67922051 (-) False LOC110501000
XM_036945069.1 mRNA downstream 10100 67810583 ~ 67922051 (-) False LOC110501000
XM_036945077.1 mRNA upstream 33408 67966234 ~ 67997618 (-) False LOC110500996
XM_036945075.1 mRNA upstream 33408 67966234 ~ 67997918 (-) False LOC110500996
XM_036945074.1 mRNA upstream 33408 67966234 ~ 67997920 (-) False LOC110500996
XM_036945076.1 mRNA upstream 33408 67966234 ~ 67997921 (-) True LOC110500996
XM_036945079.1 mRNA upstream 65706 67998532 ~ 68239937 (-) False LOC110513021
TU1507110 other downstream 134316 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 738658 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 847546 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 970847 66960951 ~ 66961304 (-) True G1319847
TU1506128 other downstream 1064411 66863841 ~ 66867740 (-) True LOC110490781
TU1508038 other upstream 139575 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1098200 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 1222700 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 1287477 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 1629484 69562310 ~ 69563040 (-) True G1321997

Expression Profile