RNA id: TU1508052


Basic Information

Item Value
RNA id TU1508052
length 417
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1321252
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67946995 ~ 67947411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGATTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGACTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGATTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGACTACCATGTACTTAGTCTAGCCTGCTAGCTACTGGGAAGAGACTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGACTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGATTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGACTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGATTACCACGTACTTAGTCTAGCCTGCTAGAAACTGGGAAGAGACTACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508048 lncRNA downstream 5791 67941004 ~ 67941204 (-) True G1321248
TU1508046 lncRNA downstream 14169 67932151 ~ 67932826 (-) True G1321246
TU1507289 lncRNA downstream 35529 67911096 ~ 67911466 (-) True G1320640
TU1507277 lncRNA downstream 67404 67879338 ~ 67879591 (-) True G1320628
TU1507239 lncRNA downstream 107367 67839302 ~ 67839628 (-) True LOC110501000
TU1508053 lncRNA upstream 280 67947691 ~ 67947987 (-) True G1321253
TU1508054 lncRNA upstream 1243 67948654 ~ 67949235 (-) True G1321254
TU1508055 lncRNA upstream 3700 67951111 ~ 67951338 (-) True G1321255
TU1508067 lncRNA upstream 22908 67970319 ~ 67971033 (-) False G1321267
TU1508068 lncRNA upstream 22908 67970319 ~ 67970644 (-) True G1321267
XM_036945065.1 mRNA downstream 24944 67810583 ~ 67922051 (-) False LOC110501000
XM_036945077.1 mRNA upstream 18823 67966234 ~ 67997618 (-) False LOC110500996
XM_036945075.1 mRNA upstream 18823 67966234 ~ 67997918 (-) False LOC110500996
XM_036945074.1 mRNA upstream 18823 67966234 ~ 67997920 (-) False LOC110500996
XM_036945076.1 mRNA upstream 18823 67966234 ~ 67997921 (-) True LOC110500996
XM_036945079.1 mRNA upstream 51121 67998532 ~ 68239937 (-) False LOC110513021
TU1507110 other downstream 149160 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 753502 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 862390 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 985691 66960951 ~ 66961304 (-) True G1319847
TU1506128 other downstream 1079255 66863841 ~ 66867740 (-) True LOC110490781
TU1508038 other upstream 124990 68072401 ~ 68176382 (-) True LOC110513021
TU1508586 other upstream 1083615 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 1208115 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 1272892 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 1614899 69562310 ~ 69563040 (-) True G1321997

Expression Profile