RNA id: TU1508482



Basic Information


Item Value
RNA id TU1508482
length 446
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G1321579
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 68789644 ~ 68790154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGAATACAGGTAAACAGGGCTTTCTGTCTGGAGTGGAGGGATACAGAGAAACAGGGCTTTCTCTGTTATTGGAATCTACTGTAATACAACCTCTTCGTCTCTCTGCTGTAGAGTGCATTCCTTGTCCATACATCGCTATCCGTTCCAGACTTGGAAAACATATCTGGAGGATTTCCATTGGTTTCCTGTGGGGATTTGACCTTAGTTCCCACGAGTGTGTAAAGGGTTGAGGCTATTGACCGTTGGTTTGAGGTGTGACCTCTCATTGACCATGTTCTACTCACGTTGACCGTCTCTCGACCGTTGGTTAGAGGTGTCTTTGACCTCTCATTGACCATGTTCTACTCACGTTGACCGTCTCTCGACCGTTGTACTTGGCTCTGATGAGGGGGCTCTGTATGATGTCCAGGTTGGTGCCGGTCACGGTCACAGGTGTGTGTCCActg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1508479 lncRNA downstream 1362 68788072 ~ 68788282 (-) True G1321576
TU1508478 lncRNA downstream 5125 68784268 ~ 68784519 (-) True G1321575
TU1508474 lncRNA downstream 13027 68776381 ~ 68776617 (-) True G1321571
TU1508470 lncRNA downstream 25182 68764165 ~ 68764462 (-) True G1321567
TU1508462 lncRNA downstream 66257 68708356 ~ 68723387 (-) True G1321561
TU1508483 lncRNA upstream 543 68790697 ~ 68790899 (-) True G1321580
TU1508485 lncRNA upstream 3445 68793599 ~ 68793807 (-) True G1321582
TU1508544 lncRNA upstream 129236 68919390 ~ 68921094 (-) True G1321622
TU1508569 lncRNA upstream 194562 68984716 ~ 68985821 (-) True G1321643
TU1508591 lncRNA upstream 215172 69005326 ~ 69036033 (-) True G1321657
XM_036945079.1 mRNA downstream 549707 67998532 ~ 68239937 (-) False LOC110513021
XM_036945076.1 mRNA downstream 791723 67966234 ~ 67997921 (-) True LOC110500996
XM_036945074.1 mRNA downstream 791724 67966234 ~ 67997920 (-) False LOC110500996
XM_036945075.1 mRNA downstream 791726 67966234 ~ 67997918 (-) False LOC110500996
XM_036945077.1 mRNA downstream 792026 67966234 ~ 67997618 (-) False LOC110500996
XM_036945094.1 mRNA upstream 294651 69084805 ~ 69114891 (-) False LOC110490613
XM_036945095.1 mRNA upstream 294651 69084805 ~ 69114891 (-) True LOC110490613
XM_036945097.1 mRNA upstream 328623 69118777 ~ 69127449 (-) False LOC110490606
XM_036945096.1 mRNA upstream 328623 69118777 ~ 69127452 (-) False LOC110490606
XM_036945099.1 mRNA upstream 359323 69149477 ~ 69162598 (-) False LOC110490790
TU1508038 other downstream 613262 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 991809 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 1596151 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 1705039 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 1828340 66960951 ~ 66961304 (-) True G1319847
TU1508586 other upstream 240872 69031026 ~ 69073276 (-) False G1321652
TU1508651 other upstream 365372 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 430149 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 772156 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 1108531 69898685 ~ 69899703 (-) True G1322348

Expression Profile