RNA id: TU1508586



Basic Information


Item Value
RNA id TU1508586
length 896
RNA type TUCP
GC content 0.50
exon number 3
gene id G1321652
representative False

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69031026 ~ 69073276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aagcacTTGAGCCAGTGACATCGCAAAATACGAGAGACAGAGGCGGGTTTGGATTATTCCTTTGGTACGATAGTAAGATGCTTACAAACTAATTATCTTTTCCATTGGCAAATCCTTGCTCTCACAGCCCAAACAAGGAGCAACGGCTTGTGTGCAGAAGTAGAGCCTTTGCAGCATGCGGCAGGATAGAAGGCAGGAAAACGAGGCAACAGGAGACTGGCGCACCTGGAGTCGACAAAACGCCGCGGATTGAGCCTCTCTCGCAGTGCGCACGTCACTGCGCACGTTGGCCCAGGGGATGTCCTCTGGCCACCAGATGGGCTTGCAGCTCTCCTTGCCCCAGCCAGGCTTGCCCCTGCCCGTCGAATACTTCAACATCTCTGGGATGAACGCTCGCAGCTGGGCCTGTGTCATCTTGTCCACAGAGACGGGGATGCCGTCAATGGTGAGGGGGGGCAGCTCGGAGGTTAGTTCCCCCCCGGGGGGTGCGTGCTCGGCCAGGGCGTTCTCCAGGTCCTCCAGGATCATGCCCTTGTACTTCCTCACCtgcagggagaaggaggaggggtagGAAAAACATGGGTTAGTGGACGACCCAGAGTAGGGGGCAAAGGTCAAGGGAAGGTTATCCCTAACCTTGTAAAAGCAGTCTGAGAACCAAACGTTGTGACATAGTGAAAATTGCaggctagggctgggcgatatggccaaaaccTCATATCCTGACATAGGTCAATTCATATCCCGATAACGATACATATCACGATATAGCACATTTTCTGTCAATTCAATGAATAAATAGTTTATATAAATTGACCACACGTAAAGGCCCATTtcttattacattttgaattaaACTCAACAAATAAAGGTACTTACTCATATTTGATTATTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1508602 lncRNA downstream 517 69029708 ~ 69030509 (-) True G1321668
TU1508569 lncRNA downstream 45205 68984716 ~ 68985821 (-) True G1321643
TU1508544 lncRNA downstream 109932 68919390 ~ 68921094 (-) True G1321622
TU1508485 lncRNA downstream 237219 68793599 ~ 68793807 (-) True G1321582
TU1508483 lncRNA downstream 240127 68790697 ~ 68790899 (-) True G1321580
TU1508626 lncRNA upstream 8453 69081729 ~ 69082080 (-) True G1321688
TU1508632 lncRNA upstream 45699 69118975 ~ 69120412 (-) False LOC110490606
TU1508633 lncRNA upstream 49563 69122839 ~ 69127351 (-) False LOC110490606
TU1508634 lncRNA upstream 49619 69122895 ~ 69127351 (-) True LOC110490606
TU1508661 lncRNA upstream 96886 69170162 ~ 69170509 (-) True G1321720
XM_036945079.1 mRNA downstream 791089 67998532 ~ 68239937 (-) False LOC110513021
XM_036945076.1 mRNA downstream 1033105 67966234 ~ 67997921 (-) True LOC110500996
XM_036945074.1 mRNA downstream 1033106 67966234 ~ 67997920 (-) False LOC110500996
XM_036945075.1 mRNA downstream 1033108 67966234 ~ 67997918 (-) False LOC110500996
XM_036945077.1 mRNA downstream 1033408 67966234 ~ 67997618 (-) False LOC110500996
XM_036945094.1 mRNA upstream 11529 69084805 ~ 69114891 (-) False LOC110490613
XM_036945095.1 mRNA upstream 11529 69084805 ~ 69114891 (-) True LOC110490613
XM_036945097.1 mRNA upstream 45501 69118777 ~ 69127449 (-) False LOC110490606
XM_036945096.1 mRNA upstream 45501 69118777 ~ 69127452 (-) False LOC110490606
XM_036945099.1 mRNA upstream 76201 69149477 ~ 69162598 (-) False LOC110490790
TU1508038 other downstream 854644 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1233191 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 1837533 67193116 ~ 67193493 (-) True G1320139
TU1506555 other downstream 1946421 67080781 ~ 67084605 (-) True LOC110511902
TU1506236 other downstream 2069722 66960951 ~ 66961304 (-) True G1319847
TU1508651 other upstream 82250 69155526 ~ 69156999 (-) True LOC110490790
TU1508670 other upstream 147027 69220303 ~ 69223028 (-) True G1321729
TU1509018 other upstream 489034 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 825409 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1463176 70536452 ~ 70537139 (-) True G1323036

Expression Profile