RNA id: TU1508670


Basic Information

Item Value
RNA id TU1508670
length 2726
RNA type TUCP
GC content 0.46
exon number 1
gene id G1321729
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69220303 ~ 69223028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACTGCATTGTTTATTGATGTAAAAGTCAAGCTGtaagatatgtacagtacatttaaACCATCCATATATTATCACAAAAATATTGATAACTTCAAATGTACAAATTCATAGCTTTGTACCAACACAACATACAGCACTAGATGAGTGACTTGAATTGGACCAAACGCAGTGTTCAGCTGCTGTAGTGACTGGTTATTCATATAGTACATTCAACTGCATATCACTGATTGAAAGACACTTGACAAAACATTATTTGAAAAGAATAGTATGAGTAACAGCTGTGAAGTGGCCTACCTGATTAGTTTGTAGATTTGCACACTAATTGTACAATGATGCATTTCTTAGATATTCAGCAGGAAAGGGGTAACAAGAGGCCAATCTTTGAGAAAAACATGTTACTTTTACCATCTATTCAACATGTCAGAGCTACAGTGGTGGGCCTATTCATTGTTGCTCTCCTGGATCTCAAATGTAACCACTAATGGGGATGCTCTGAAAAGACCCTCGGCACTCAACGTGACCTAAAAACCTGAGTGTTGCTATTTCTCTTCTACTTTGAGACAATGCTGTGAAGAACACAAGTGTTTGAAACCATTTCAAAGACGCAGTAAATTGATAAATGACTTGCTCTTAGCATAAAACGCCAAGAGTCCTGCACGCTGCTGCCCGTAGGAATGTTAGCAATAAAACAAAACCCATctttattaaatatatttatcTCTGCTTAAAACAAAAAGTTCCACTTGGAGATGGGCGTTCAGACTGTCTCCGGTGCTGCTGGTTGGAGGTCTCCAGCTCGAACTCCCCCGGGTCACctaagccttgttcacactgcaggccttaatgctcaaatcagttttttaaattcattttggaatactgactgtccaaacatcAAGTTACCAAATCAGATTAGTTTGTGTTCAGACAGCAatcatttgctgacatggctatgctagttgtcatagtaacgacGGGTGTGTGCGCGGTGTAGGTGTTTGTGCTTCCTAGcactcagaagttatgtagcaGGCTAAGGTGACGACTCCTGCCATGGAagtttcccagttgctttgaatgttcaaaataatttaaaacaattaacaagctagttagctaccacgtTCTTGtcagagtagctagcaagcaacaagagatgccaaataacagtctaaaaacaccttgagggctacgaaggtggtttgaaatgtggctAGAAATATCCTAATCCATTTcctgttcagactgcaggaaaaaaggaacatatttgatttatatgtatatacacactgctcaaaaaaataaacgggaacactaaaataacacatcctagatcagaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgctgacaacaaaatcacaccaaaatgatcaatggaaatcaaattgatcaacccatggatgtctggatttggagtcacactcaaaattaaagtggaaagccacactacaggctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgaccttcctacaacgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgttgttggtggatggagcgagacatgatgtcccagatgtgctcaattggattcaggtctggggaacgggcgggccagtccacagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgtcttgcattaggaggaacccacggccaaccgcaccagcatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagtcaggctacctctggcgagcacatggagggctgtgcggccccccagagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactgtcacgtctgtcacatgtgctcagtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccgaTCTTGgggttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacccgtggatgtcgggccctcataccaccctcatggagtctgtttctgaccgtttgagcagacacatgcacatttgtcgCCTGCTGCatttggcagtgctcctcctgctcctccttgcacaaaggcggaggtagcggtcctgctgctgggttgttgccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggagactacgctgacagacacagcaaaccttcttgccacagctcgcattgatgtgccatcctggatgagctgcactacctgagccacttgtgtgggttgtagactccgtctcatgctaccactagagtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtggttaccacctgcaaaaccactcctttattggggggtgtcttgctaattgcctataatttccacctgttgtctattccatttgcacaacagcatgtgcaatgcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1508671 lncRNA downstream 6640 69213441 ~ 69213663 (-) True G1321730
TU1508657 lncRNA downstream 33953 69184874 ~ 69186350 (-) True LOC110490615
TU1508661 lncRNA downstream 49794 69170162 ~ 69170509 (-) True G1321720
TU1508633 lncRNA downstream 92952 69122839 ~ 69127351 (-) False LOC110490606
TU1508634 lncRNA downstream 92952 69122895 ~ 69127351 (-) True LOC110490606
TU1508680 lncRNA upstream 28207 69251235 ~ 69251458 (-) True G1321739
TU1508681 lncRNA upstream 28933 69251961 ~ 69252193 (-) True G1321740
TU1508688 lncRNA upstream 44564 69267592 ~ 69267847 (-) True G1321747
TU1508689 lncRNA upstream 45023 69268051 ~ 69268455 (-) True G1321748
TU1508727 lncRNA upstream 82440 69305468 ~ 69305834 (-) True G1321778
XM_036945108.1 mRNA downstream 18363 69184655 ~ 69201940 (-) False LOC110490615
XM_036945102.1 mRNA downstream 35803 69164155 ~ 69184500 (-) True smo
XM_036945098.1 mRNA downstream 56609 69149477 ~ 69163694 (-) False LOC110490790
XM_036945099.1 mRNA downstream 57705 69149477 ~ 69162598 (-) False LOC110490790
XM_036945096.1 mRNA downstream 92851 69118777 ~ 69127452 (-) False LOC110490606
XM_036945111.1 mRNA upstream 43 69223071 ~ 69227704 (-) True LOC110490619
XM_036945110.1 mRNA upstream 10685 69233713 ~ 69237810 (-) True LOC110490620
XM_036945113.1 mRNA upstream 110192 69333220 ~ 69417060 (-) False LOC110490621
XM_036945112.1 mRNA upstream 114674 69337702 ~ 69417065 (-) False LOC110490621
XM_036945114.1 mRNA upstream 201812 69424840 ~ 69430808 (-) True LOC110499783
TU1508651 other downstream 63304 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 147027 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1043921 68072401 ~ 68176382 (-) True LOC110513021
TU1507110 other downstream 1422468 67793025 ~ 67797835 (-) True LOC118938833
TU1506612 other downstream 2026810 67193116 ~ 67193493 (-) True G1320139
TU1509018 other upstream 339282 69562310 ~ 69563040 (-) True G1321997
TU1509441 other upstream 675657 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 1313424 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 1320328 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1802223 71025251 ~ 71039522 (-) True G1323207

Expression Profile