RNA id: TU1509266


Basic Information

Item Value
RNA id TU1509266
length 768
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1322206
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69572489 ~ 69573256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggccagagttgggtcagtatgttggcagcagccactcaatgttagtggtggctgtttaacagtctgatggccttgagatagaagctgtttttcagtctctcggcccctgctttgatgcacctgtactgacctcgccttctggatgatagcggggtgaacaggcagtggctcgggtggttactgtccttgatgatctttttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggtagtttgcccccggtgatgcattgtgcagacctcactaccctctggagagccttacggttgtgagcggagcagttgccttaccttaccaggcggtgatataacaggatgctctcgattgtgcatctgtaaaagtttgtgagtgattttggtgacaagctgaatttcttcagcctcctgaggttgaagaggcgctgttgcgccttcttcaccacgctgtctgtgtgggtggaccaattcagtttgtccgtgatgtgtacgccgaggaacttaaaactttccaccttctccactactgtcccgtcgatgtggataggggggtgctccctctgctgtttcctgaagtccacgatcatctcctttgttttgttgacgttgagtgtgaggttattttcctgacagcacactccaagggccctcacctcctccctgtaggccatctcatcGTTCTTGGTAATCAAGCTGTAgtatcgtctgcaaacttgatgattgagttggaggtgtgcatggccacgcagtcatggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509261 lncRNA downstream 7783 69564357 ~ 69564706 (-) True G1322201
TU1509016 lncRNA downstream 10472 69561654 ~ 69562017 (-) True G1321995
TU1509015 lncRNA downstream 11346 69560816 ~ 69561143 (-) True G1321994
TU1509009 lncRNA downstream 20954 69551139 ~ 69551535 (-) True G1321988
TU1508999 lncRNA downstream 30902 69541047 ~ 69541587 (-) True G1321978
TU1509271 lncRNA upstream 29701 69602957 ~ 69603224 (-) True G1322211
TU1509272 lncRNA upstream 31196 69604452 ~ 69604756 (-) True G1322212
TU1509273 lncRNA upstream 34089 69607345 ~ 69608098 (-) True G1322213
TU1509310 lncRNA upstream 71959 69645215 ~ 69645423 (-) True G1322237
TU1509325 lncRNA upstream 88043 69661299 ~ 69661523 (-) True G1322252
XM_036945116.1 mRNA downstream 46361 69513903 ~ 69526128 (-) True LOC110511775
XM_036945115.1 mRNA downstream 46391 69513903 ~ 69526098 (-) False LOC110511775
XM_036945122.1 mRNA downstream 59086 69502537 ~ 69513403 (-) True LOC110500968
XM_036945114.1 mRNA downstream 141681 69424840 ~ 69430808 (-) True LOC110499783
XM_036945112.1 mRNA downstream 155424 69337702 ~ 69417065 (-) False LOC110490621
XR_005036200.1 mRNA upstream 36489 69609745 ~ 69610345 (-) True LOC110499763
XM_036945124.1 mRNA upstream 38367 69611623 ~ 69614219 (-) True LOC118936535
XM_036945125.1 mRNA upstream 45712 69618968 ~ 69640826 (-) False LOC110499760
XM_036945127.1 mRNA upstream 45712 69618968 ~ 69640826 (-) False LOC110499760
XM_036945129.1 mRNA upstream 45712 69618968 ~ 69640826 (-) False LOC110499760
TU1509018 other downstream 9449 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 349461 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 415490 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 499213 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1396107 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 325429 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 963196 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 970100 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1451995 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1629244 71202500 ~ 71237846 (-) False G1323296

Expression Profile