RNA id: TU1509271


Basic Information

Item Value
RNA id TU1509271
length 268
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1322211
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69602957 ~ 69603224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAATTTGTGCACTTTGCGGGAAAAATTGTGTCTGTGGTGGAAGCAGGAACTGCATGAATTAGATTGTTTATTCACGACTGCCTTTCAAAAAACCTCTCGTGTGTTTTGCACCTTAATGCTTCATTGTTCCGTCTTTTGGTATGATGGAAATACATCATCAACATCATAGACAGACAGAAGGTTCCCTGTGGTACGAtttctactgtttgtgtggaagtatttGCGCAGCtataaaatggatgtctttgtGTAATGAACTTCAGAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509266 lncRNA downstream 29701 69572489 ~ 69573256 (-) True G1322206
TU1509261 lncRNA downstream 38251 69564357 ~ 69564706 (-) True G1322201
TU1509016 lncRNA downstream 40940 69561654 ~ 69562017 (-) True G1321995
TU1509015 lncRNA downstream 41814 69560816 ~ 69561143 (-) True G1321994
TU1509009 lncRNA downstream 51422 69551139 ~ 69551535 (-) True G1321988
TU1509272 lncRNA upstream 1228 69604452 ~ 69604756 (-) True G1322212
TU1509273 lncRNA upstream 4121 69607345 ~ 69608098 (-) True G1322213
TU1509310 lncRNA upstream 41991 69645215 ~ 69645423 (-) True G1322237
TU1509325 lncRNA upstream 58075 69661299 ~ 69661523 (-) True G1322252
TU1509341 lncRNA upstream 105490 69708714 ~ 69710973 (-) True G1322267
XM_036945116.1 mRNA downstream 76829 69513903 ~ 69526128 (-) True LOC110511775
XM_036945115.1 mRNA downstream 76859 69513903 ~ 69526098 (-) False LOC110511775
XM_036945122.1 mRNA downstream 89554 69502537 ~ 69513403 (-) True LOC110500968
XM_036945114.1 mRNA downstream 172149 69424840 ~ 69430808 (-) True LOC110499783
XM_036945112.1 mRNA downstream 185892 69337702 ~ 69417065 (-) False LOC110490621
XR_005036200.1 mRNA upstream 6521 69609745 ~ 69610345 (-) True LOC110499763
XM_036945124.1 mRNA upstream 8399 69611623 ~ 69614219 (-) True LOC118936535
XM_036945125.1 mRNA upstream 15744 69618968 ~ 69640826 (-) False LOC110499760
XM_036945127.1 mRNA upstream 15744 69618968 ~ 69640826 (-) False LOC110499760
XM_036945129.1 mRNA upstream 15744 69618968 ~ 69640826 (-) False LOC110499760
TU1509018 other downstream 39917 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 379929 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 445958 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 529681 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1426575 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 295461 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 933228 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 940132 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1422027 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1599276 71202500 ~ 71237846 (-) False G1323296

Expression Profile