RNA id: TU1509372



Basic Information


Item Value
RNA id TU1509372
length 604
lncRNA type intronic
GC content 0.46
exon number 4
gene id G1322290
representative True

Chromosome Information


Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69798289 ~ 69799504 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacagaGTAGAACATAGCTATCCCCACAGTTATacccacagctatacccacagaGTAGAACATAGCTATccccacagctatacccacagctatacccacagaGTAGAACATAGCTATCCCCACAGCTATACCCAcagAGTAGAACATAGCTATccccacagctatacccacagctatacccacagctatacccacagctatacccacagaGTAGAACATAGCTATCCCCACAGTTATACACATGCTGGTTCATAAACACAAAATACACAAACGCATGTTGTATCATCATCGACGATCACTCAAGTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCAGTATGATTGTCCTCCCGTATGATTGTCCTCCAGTATGATTGTCCTCCATGGGGACTTCTATGGTTGGGTCTTCAGAAGGCTGTAGAGGCTGAGCTGAGATCCTCAGGCTCTGTTACAATGTGGACATGTGTGAGTGATGGTTGTGATGATGGTTGGGTCTTCAGAAGGCTGTAGAGGCTGAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1509368 lncRNA downstream 7991 69789656 ~ 69790298 (-) True G1322286
TU1509341 lncRNA downstream 87316 69708714 ~ 69710973 (-) True G1322267
TU1509325 lncRNA downstream 136766 69661299 ~ 69661523 (-) True G1322252
TU1509310 lncRNA downstream 152866 69645215 ~ 69645423 (-) True G1322237
TU1509273 lncRNA downstream 190191 69607345 ~ 69608098 (-) True G1322213
TU1509375 lncRNA upstream 4987 69804491 ~ 69805095 (-) True G1322292
TU1509421 lncRNA upstream 72524 69872028 ~ 69875892 (-) True G1322334
TU1509432 lncRNA upstream 80011 69879515 ~ 69880558 (-) True G1322340
TU1509430 lncRNA upstream 81137 69880641 ~ 69881089 (-) True G1322338
TU1509440 lncRNA upstream 98244 69897748 ~ 69899703 (-) False G1322348
XM_036945130.1 mRNA downstream 15748 69678178 ~ 69782541 (-) False LOC110500965
XM_036945133.1 mRNA downstream 15781 69678178 ~ 69782508 (-) False LOC110500965
XM_036945134.1 mRNA downstream 66701 69678178 ~ 69731588 (-) False LOC110500965
XM_036945135.1 mRNA downstream 66701 69678178 ~ 69731588 (-) False LOC110500965
XR_005036359.1 mRNA downstream 168495 69629658 ~ 69629794 (-) True LOC118938965
XM_036945144.1 mRNA upstream 81720 69881224 ~ 69890642 (-) False LOC110499751
XM_036945142.1 mRNA upstream 81720 69881224 ~ 69891077 (-) False LOC110499751
XM_036945143.1 mRNA upstream 81720 69881224 ~ 69891087 (-) False LOC110499751
XM_036945145.1 mRNA upstream 81723 69881227 ~ 69891071 (-) True LOC110499751
XM_036945146.1 mRNA upstream 105917 69905421 ~ 69927630 (-) False LOC110499754
TU1509018 other downstream 235249 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 575261 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 641290 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 725013 69031026 ~ 69073276 (-) False G1321652
TU1508038 other downstream 1621907 68072401 ~ 68176382 (-) True LOC110513021
TU1509441 other upstream 99181 69898685 ~ 69899703 (-) True G1322348
TU1510302 other upstream 736948 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 743852 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1225747 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1402996 71202500 ~ 71237846 (-) False G1323296

Expression Profile