RNA id: TU1509429


Basic Information

Item Value
RNA id TU1509429
length 1495
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1322337
representative False

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69945641 ~ 69990817 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAACAATGTATAGCTTTAAAAAacatgttatgttttttttaaacaaataattGATCTGTCTTTGCATCCGTAGCTCCatgtatgaatttgagagtggttatattTCTCTAACTACattcctcagctgtttaccaaaacaagtagTGGGGTGTCTGGGAAGTTGTTGTTTTTATCCCAAACTGTAGCTTTACAGGACATCCCACTCTTACATACTTCATCGTACAATGTCTACACATGTCTTTATAAGTCCTATAAGTTTAGATCGGATCATATTTcactgattttatttatgtatctaCAGTATTTTAGTTGTTTCACAAAGCATGTACAGTAAGgataataattataattaaaGGTATACCATTATTATACACATAGTTCAGTAGTAACCTTACCTGGTATAAACGTGGCCTGCAGAGTTGACCCCAAAGACACCACCATCAGTTGCCACTTCAATCATGGAAAGCTTGCCGCCAATGTGACTCCACCCGTTGTTTTGGCAGTCTTGATTCAGCTGAAAACAAACAGAGTGTGTTTTAGGACAATTACAACAGTTATAATATGAAACAGTTTTAGAATAACtgacactctccatcctctactaCTCTGCTCCAGCTCTCACACTCTTTCCCAGCTCTTACACTCATTAAGTAGATATCATCATTCTTGTTGACTGCCCAGCACCCAAAAGGTCCGCAACTAGAATACTTCACACTTCCTGGCAATCCTGTCCATGGAAGGGGTGAGCCTGGACCCTTGTAGCCAACTGTGGCACTACGTGTCAGACAGTATGGTGTATCGTCCACGTTGGCCCCCACAATAAACTGTTCACCTCCAGCATCCAACTGTTTCAGAAGGCCTGAAGaccacaaagagagacagacagacggacaagcAAACAAGGAGCACATATCTGTGAGTACTTCCAAATGACATACAAGTTTACAATTTAAAATGTTTTCAACAGCCTGATGGTATCAGGAAAGCTAAGAAGCAGGTGTCCTCTGGATAAATATTGAGTAATTCTCTCCACTAACCTGCAGCTTGCACCCAGTTACCGGCCACATACTTGTAGATTGAGTCTGCCTTGTTGATACCCCAGATCCCTGCTGGTCCTACAGTGATATGCTTCAGGGAACCAGGCAGGCGGATCCATTCATCACCTACCAGGTAGTAGGGGATTTGACTTGTGTCTGTTGCAACCACTTGTCCCAGTCCTGCATCGATCTGCATCAGATTCTTGATGTTTACTACCTCCTGACAGTCCCATGCATGACTGATGGTCAGGAGACATAGGACCAATAGGACGGCTGCAGTCGCTCTCATGATGTCTCTGTAGATCTACGGTATACGTTTGGTTGTAAACCAGACTTCAATTGTCCCCTTGCAAGACTTTGCACTTTTATAGTGTTGTGGAAAATATTGAATCAAATAATTCACCAATACCAAAACTTGTGAATTTATTACAAAGTAACAGAGCCGAGCAATTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1509440 lncRNA downstream 45938 69897748 ~ 69899703 (-) False G1322348
TU1509430 lncRNA downstream 64552 69880641 ~ 69881089 (-) True G1322338
TU1509432 lncRNA downstream 65083 69879515 ~ 69880558 (-) True G1322340
TU1509421 lncRNA downstream 69749 69872028 ~ 69875892 (-) True G1322334
TU1509375 lncRNA downstream 140546 69804491 ~ 69805095 (-) True G1322292
TU1509426 lncRNA upstream 157 69947408 ~ 69990817 (-) True G1322337
TU1509433 lncRNA upstream 29455 69976706 ~ 70001692 (-) True G1322341
TU1509478 lncRNA upstream 55257 70002508 ~ 70002730 (-) True G1322380
TU1509479 lncRNA upstream 56463 70003714 ~ 70003946 (-) True G1322381
TU1509501 lncRNA upstream 79973 70027224 ~ 70027596 (-) True G1322403
XM_036945147.1 mRNA downstream 18010 69905421 ~ 69927631 (-) True LOC110499754
XM_036945146.1 mRNA downstream 18011 69905421 ~ 69927630 (-) False LOC110499754
XM_036945143.1 mRNA downstream 54554 69881224 ~ 69891087 (-) False LOC110499751
XM_036945142.1 mRNA downstream 54564 69881224 ~ 69891077 (-) False LOC110499751
LOC110490659 mRNA upstream 446010 70393261 ~ 70394050 (-) True LOC110490659
XM_021564126.2 mRNA upstream 448480 70395731 ~ 70397315 (-) True LOC110490652
XM_036945185.1 mRNA upstream 596125 70543376 ~ 70547418 (-) False LOC110490645
XM_036945178.1 mRNA upstream 603337 70550588 ~ 70558749 (-) False si:dkey-14k9.3
XM_036945177.1 mRNA upstream 603337 70550588 ~ 70558751 (-) True si:dkey-14k9.3
TU1509441 other downstream 45938 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 382601 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 722613 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 788642 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 872365 69031026 ~ 69073276 (-) False G1321652
TU1510302 other upstream 589201 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 596105 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 1078000 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 1255249 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 1255489 71202740 ~ 71237846 (-) True G1323296

Expression Profile