RNA id: TU1510226


Basic Information

Item Value
RNA id TU1510226
length 255
lncRNA type intronic
GC content 0.55
exon number 1
gene id G1322968
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70435099 ~ 70435353 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAACCTCTGTTTATGACGGGGAATATAGCAGCAAGCACCACTTCACAACGTCGTACCGGGGAGGTGATCTCAGCCTCAGTCAGACGCATCGCTAGTCCCTGTTGAGCACAACAATCATGCTACGATGCAGCGGCAGCACCGCAAGCCCCAGGTTGACCCACACAAATatgaacgcacgcacacacgcacacacacacacacacacacacacacacacacacacgcacacgcacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510163 lncRNA downstream 138281 70241711 ~ 70296818 (-) True G1322914
TU1510169 lncRNA downstream 173570 70260906 ~ 70261529 (-) True G1322918
TU1510151 lncRNA downstream 225710 70209166 ~ 70209389 (-) True G1322902
TU1510147 lncRNA downstream 233544 70201312 ~ 70201555 (-) True G1322899
TU1510145 lncRNA downstream 236652 70197964 ~ 70198447 (-) False G1322898
TU1510229 lncRNA upstream 4726 70440079 ~ 70440399 (-) True G1322971
TU1510231 lncRNA upstream 8388 70443741 ~ 70443942 (-) True G1322973
TU1510254 lncRNA upstream 43465 70478818 ~ 70479238 (-) True G1322992
TU1510258 lncRNA upstream 46346 70481699 ~ 70483098 (-) True G1322996
TU1510261 lncRNA upstream 50270 70485623 ~ 70486138 (-) True G1322999
XM_021564126.2 mRNA downstream 37784 70395731 ~ 70397315 (-) True LOC110490652
LOC110490659 mRNA downstream 41049 70393261 ~ 70394050 (-) True LOC110490659
XM_036945147.1 mRNA downstream 507468 69905421 ~ 69927631 (-) True LOC110499754
XM_036945146.1 mRNA downstream 507469 69905421 ~ 69927630 (-) False LOC110499754
XM_036945143.1 mRNA downstream 544012 69881224 ~ 69891087 (-) False LOC110499751
XM_036945185.1 mRNA upstream 108023 70543376 ~ 70547418 (-) False LOC110490645
XM_036945178.1 mRNA upstream 115235 70550588 ~ 70558749 (-) False si:dkey-14k9.3
XM_036945177.1 mRNA upstream 115235 70550588 ~ 70558751 (-) True si:dkey-14k9.3
XM_036945179.1 mRNA upstream 123643 70558996 ~ 70565537 (-) False LOC110515225
XM_036945181.1 mRNA upstream 123643 70558996 ~ 70565537 (-) False LOC110515225
TU1509441 other downstream 535396 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 872059 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1212071 69220303 ~ 69223028 (-) True G1321729
TU1508651 other downstream 1278100 69155526 ~ 69156999 (-) True LOC110490790
TU1508586 other downstream 1361823 69031026 ~ 69073276 (-) False G1321652
TU1510302 other upstream 101099 70536452 ~ 70537139 (-) True G1323036
TU1510280 other upstream 108003 70543356 ~ 70545220 (-) True LOC110490645
TU1510499 other upstream 589898 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 767147 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 767387 71202740 ~ 71237846 (-) True G1323296

Expression Profile