RNA id: TU1510364


Basic Information

Item Value
RNA id TU1510364
length 311
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1323085
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70705110 ~ 70705420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caaaaggcgacactacaggtgacatttttacccggactcgagtattagcgacggaaaaagcctccaagaagaagctagcttcagaaaaaactagcgccattagccaggagcaagagaacccgctcccccacgaggcacaacgaatgccaacctcgcactctgtcgaagacatcctttctgagttgagatcccaacgtacagaactaaacactaaattagatgccattaattctcagctcagtgcgatagggggcaaggtgacaatcctggaaaacgctttgcctgacatcaacaacaagataaccataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510362 lncRNA downstream 2651 70702047 ~ 70702459 (-) True G1323083
TU1510361 lncRNA downstream 6860 70697945 ~ 70698250 (-) True G1323082
TU1510334 lncRNA downstream 13358 70652058 ~ 70691752 (-) True G1323063
TU1510308 lncRNA downstream 122034 70582174 ~ 70583076 (-) True G1323042
TU1510298 lncRNA downstream 173227 70531587 ~ 70531883 (-) True G1323032
TU1510367 lncRNA upstream 7548 70712968 ~ 70713236 (-) True G1323088
TU1510368 lncRNA upstream 8305 70713725 ~ 70714465 (-) True G1323089
TU1510369 lncRNA upstream 10569 70715989 ~ 70716422 (-) True G1323090
TU1510370 lncRNA upstream 12190 70717610 ~ 70718073 (-) True G1323091
TU1510373 lncRNA upstream 23478 70728898 ~ 70729277 (-) True G1323094
XM_036945190.1 mRNA downstream 56074 70644164 ~ 70649036 (-) True LOC118938838
XM_036945166.1 mRNA downstream 98961 70593116 ~ 70606149 (-) True LOC110490633
XM_036945167.1 mRNA downstream 98962 70593116 ~ 70606148 (-) False LOC110490633
XM_036945168.1 mRNA downstream 112433 70583258 ~ 70592677 (-) True LOC110490634
XM_036945174.1 mRNA downstream 116569 70574105 ~ 70588541 (-) True LOC110490800
XM_036945195.1 mRNA upstream 27942 70733362 ~ 70755356 (-) False LOC118936248
XM_036945196.1 mRNA upstream 27942 70733362 ~ 70755356 (-) False LOC118936248
XM_036945194.1 mRNA upstream 28762 70734182 ~ 70755355 (-) False LOC118936248
XM_021564110.2 mRNA upstream 57557 70762977 ~ 70775712 (-) False LOC110490643
XM_036945191.1 mRNA upstream 57557 70762977 ~ 70776163 (-) False LOC110490643
TU1510280 other downstream 159890 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 167971 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 805407 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1142070 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1482082 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 319831 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 497080 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 497320 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1151863 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1342544 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile