RNA id: TU1510381


Basic Information

Item Value
RNA id TU1510381
length 589
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1323101
representative True

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70731008 ~ 70733279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatgctatgatcccttaacctgctctctctttgacatagactgaccaggtgaatgctatgatcccttaacctgctctctctttgacatagactgaccaggtgaaagctatgatcccttattgatgtcacttgttaaatccatcagtgtagatgaaaggaaGAAATAGGTTCAAAagtgtttaagccttgagacatggattgtgtgtgtgtgcctttcagagggtgaatgggtaagataAAATATTTACGTGCCCTTGAACAGGCTCTGGTAGTAGCTGCCAAGAGGACCGGTTTGTAttgagaactgcaacgctgctgggtttttcacactcaaccatgtcctgtgtgtatcaagaatggtccatgaACACAACTGAAGGAAGCATTAAGCATCAAAATTGGCCAGCACCCCTGTGGAACGCCTTTgactccttgtagagtccatgtcctgacaAATTGAGGGTAAGGGGTTTTATATACTCAGTATATATGAGGTCTttaatcagatttagattgtttTTTAATGTGTGTTCTTTATCTGTTTTAGAATGAAGTAGGACATTGGTTTGAGTTGCTTTGACATTCTTG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1510373 lncRNA downstream 1731 70728898 ~ 70729277 (-) True G1323094
TU1510370 lncRNA downstream 12935 70717610 ~ 70718073 (-) True G1323091
TU1510369 lncRNA downstream 14586 70715989 ~ 70716422 (-) True G1323090
TU1510368 lncRNA downstream 16543 70713725 ~ 70714465 (-) True G1323089
TU1510367 lncRNA downstream 17772 70712968 ~ 70713236 (-) True G1323088
TU1510378 lncRNA upstream 18906 70752185 ~ 70754993 (-) True LOC118936248
TU1510380 lncRNA upstream 42485 70775764 ~ 70776821 (-) True LOC110490643
TU1510347 lncRNA upstream 43552 70776831 ~ 70848012 (-) True LOC118938960
TU1510411 lncRNA upstream 120275 70853554 ~ 70853785 (-) True G1323130
TU1510422 lncRNA upstream 142096 70875375 ~ 70875577 (-) True G1323137
XM_036945190.1 mRNA downstream 81972 70644164 ~ 70649036 (-) True LOC118938838
XM_036945166.1 mRNA downstream 124859 70593116 ~ 70606149 (-) True LOC110490633
XM_036945167.1 mRNA downstream 124860 70593116 ~ 70606148 (-) False LOC110490633
XM_036945168.1 mRNA downstream 138331 70583258 ~ 70592677 (-) True LOC110490634
XM_036945174.1 mRNA downstream 142467 70574105 ~ 70588541 (-) True LOC110490800
XM_036945195.1 mRNA upstream 83 70733362 ~ 70755356 (-) False LOC118936248
XM_036945196.1 mRNA upstream 83 70733362 ~ 70755356 (-) False LOC118936248
XM_036945194.1 mRNA upstream 903 70734182 ~ 70755355 (-) False LOC118936248
XM_021564110.2 mRNA upstream 29698 70762977 ~ 70775712 (-) False LOC110490643
XM_036945191.1 mRNA upstream 29698 70762977 ~ 70776163 (-) False LOC110490643
TU1510280 other downstream 185788 70543356 ~ 70545220 (-) True LOC110490645
TU1510302 other downstream 193869 70536452 ~ 70537139 (-) True G1323036
TU1509441 other downstream 831305 69898685 ~ 69899703 (-) True G1322348
TU1509018 other downstream 1167968 69562310 ~ 69563040 (-) True G1321997
TU1508670 other downstream 1507980 69220303 ~ 69223028 (-) True G1321729
TU1510499 other upstream 291972 71025251 ~ 71039522 (-) True G1323207
TU1510608 other upstream 469221 71202500 ~ 71237846 (-) False G1323296
TU1510607 other upstream 469461 71202740 ~ 71237846 (-) True G1323296
TU1511211 other upstream 1124004 71857283 ~ 71922908 (-) True LOC118938840
TU1512018 other upstream 1314685 72047964 ~ 72050171 (-) False LOC110500989

Expression Profile